View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15256_low_5 (Length: 251)
Name: NF15256_low_5
Description: NF15256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15256_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33633046 - 33633284
Alignment:
| Q |
1 |
tttgttatatctcgacacatcttttgatctcaaaatattggtccattaacttgttattcctt-atctcaaaatgttaggcttggaaaatgctcatgtgca |
99 |
Q |
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| T |
33633046 |
tttgttatatctcgacacatcttttgatctcaaaatattggtccattaacttgttatgcctttatctcaaaatgttaggcttggaaaatgctcatgtgca |
33633145 |
T |
|
| Q |
100 |
cgaaacatgtcatcgtgtaaatcccacaaacaagtgttattctcttgtattttattctatttaaaatgactagtgatcaatttaattctgtagattcaaa |
199 |
Q |
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| T |
33633146 |
cgaaacatgtcgtcgtgtaaatcccacaaacaattgctattctcttgtattttattctatttaaaatgactagtgatcaatttaattctgtagattcaaa |
33633245 |
T |
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| Q |
200 |
tacctcctctgatgctttaaaatctttctcaatcagtat |
238 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
33633246 |
taccacctctgatgctttaaaatctttctcaatcagtat |
33633284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 29444280 - 29444386
Alignment:
| Q |
80 |
ttggaaaatgctcatgtgcacgaaacatgtcatcgtgtaaatcccacaaacaagtgttattctcttgtattttattctatttaaaatgactagtgatcaa |
179 |
Q |
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|||| |||||||||||| |||||||||||| ||||| ||||||||| ||||| || ||| || |||||||| ||| |||||||||||||| || ||| |
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| T |
29444280 |
ttgggaaatgctcatgtacacgaaacatgttgtcgtgcaaatcccacgaacaattgctatactgttgtatttgatttgatttaaaatgactaaggaccaa |
29444379 |
T |
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| Q |
180 |
tttaatt |
186 |
Q |
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| T |
29444380 |
tttaatt |
29444386 |
T |
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