View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15257_high_1 (Length: 938)
Name: NF15257_high_1
Description: NF15257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15257_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 17 - 701
Target Start/End: Complemental strand, 44842598 - 44841915
Alignment:
| Q |
17 |
gttattgttggtaatttgaaatatatgctccggtagaacattagaaaaagaaccgtgataatttgaaagtaaatgaagtttatatgagtatactgatgat |
116 |
Q |
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| T |
44842598 |
gttattgttggtaatttgaaatatatgctccggtagaacattagaaaaagaaccgtgataatttgaaagtaaatgaagtttatatgagtatactgatgat |
44842499 |
T |
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| Q |
117 |
aagggatactgaacacatagaagagattagtttgatgagtgcaaagcagaaagccaaaaaactctagtagtattcccttgaatgatatctcttaatttga |
216 |
Q |
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| T |
44842498 |
aagggatactgaacacatagaagagattagtttgatgagtgcaaagcagaaagccaaaaaactctagtagtattcccttgaatgatatctcttaatttga |
44842399 |
T |
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| Q |
217 |
gttattcttataaaatagaatgcattatactctatgaaatcaaaaatagctttgataggaacaaagacattcgtcaagtgctaccaaagaaagtgatgta |
316 |
Q |
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| T |
44842398 |
gttattcttataaaatagaatgcattataccctatgaaatcaaaaatagctttgataggaacaaagacattcgtcaagtgctaccaaagaaagtgatgt- |
44842300 |
T |
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| Q |
317 |
cgggggatcttatcgttggtggcgacatcgcagaagttgcaagggatgaagtattggctttgagaggaaaaaacagttatactcgttttctttgattttg |
416 |
Q |
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| T |
44842299 |
cggggggacttatcgttggtggcgacatcacagaagttgcaagggatgaactattggctttgagaggaaaaaacagttatactcgttttctttgattttg |
44842200 |
T |
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| Q |
417 |
aaaaaagagggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccga |
516 |
Q |
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| T |
44842199 |
aaaaaagagggagaaaggagattgacactagtatataatctcctcttccaaaagtaaagaaagttaaaatcagttattcatttaaaggttagaaatccga |
44842100 |
T |
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| Q |
517 |
aggagtttttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagta |
616 |
Q |
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| T |
44842099 |
aggagtttttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaacaatttcctaatggctgataaagta |
44842000 |
T |
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| Q |
617 |
ataaatnnnnnnnnnnnnnnnnnnnnnnnntgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag |
701 |
Q |
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| T |
44841999 |
ataaataaaaactaaaaaaagaaaaagaaatgcaattgattgcatgcatcacagtagttatttgatgaatcaagagatggttgag |
44841915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 765 - 924
Target Start/End: Complemental strand, 44841849 - 44841668
Alignment:
| Q |
765 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatg------------------- |
845 |
Q |
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| T |
44841849 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatgatttcctgcgtgtgtacct |
44841750 |
T |
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| Q |
846 |
---aatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
924 |
Q |
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| T |
44841749 |
gtcaatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
44841668 |
T |
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