View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15257_low_2 (Length: 362)
Name: NF15257_low_2
Description: NF15257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15257_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 26 - 344
Target Start/End: Original strand, 35175430 - 35175757
Alignment:
| Q |
26 |
atcatcggaaactccaaatatgtacatgatcaagaagtaatcagaataaatcaatccccttgnnnnnnnnnnnnnggttactatcccctcgcatgtgtct |
125 |
Q |
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| T |
35175430 |
atcatcggaaactccaaatatgtacatgatcaagaagtaaacggaataaatcaatccccttgttttttttttt--ggttactatcccctcacatgtgtct |
35175527 |
T |
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| Q |
126 |
tcgtgatttatatttttcaaccgtcaaattttgtttttgagagagattaaactgacaaatgttatttgannnnnnnncacaaaacaaatgttatttgata |
225 |
Q |
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| T |
35175528 |
tcgtgatttatatttttcaactgtcaaattttgtttttgagagagattaatctgacaaatgttatttgattttttttcacaaaacaaatgttatttgata |
35175627 |
T |
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| Q |
226 |
tattttgtcagcggggaatcaagctgatctagctaccgtgct--------ca---aacaaattcaactcaatgttgtgaagtttataggatttgaactaa |
314 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35175628 |
tattttgtcagcggggaatcaaactgatctagctaccgtgcttcttcccccaaacaacaaattcaactcaatgttgtgaagtttataggatttgaactaa |
35175727 |
T |
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| Q |
315 |
tatctcaattagtcaattatattaggggtt |
344 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
35175728 |
tatcacaattagtcaattatattaggggtt |
35175757 |
T |
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