View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15257_low_3 (Length: 328)

Name: NF15257_low_3
Description: NF15257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15257_low_3
NF15257_low_3
[»] chr6 (1 HSPs)
chr6 (1-316)||(6062903-6063217)
[»] chr5 (1 HSPs)
chr5 (133-181)||(16644974-16645022)
[»] chr1 (2 HSPs)
chr1 (136-184)||(7323261-7323309)
chr1 (136-184)||(35820116-35820164)
[»] chr3 (2 HSPs)
chr3 (137-184)||(23564125-23564172)
chr3 (132-170)||(21355628-21355666)
[»] scaffold0007 (1 HSPs)
scaffold0007 (136-182)||(201309-201355)
[»] chr7 (1 HSPs)
chr7 (136-182)||(39706735-39706781)
[»] chr4 (1 HSPs)
chr4 (136-182)||(39238792-39238838)
[»] chr8 (3 HSPs)
chr8 (136-184)||(18896789-18896837)
chr8 (132-184)||(29919073-29919125)
chr8 (132-184)||(30491640-30491692)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 6062903 - 6063217
Alignment:
Q  1 gatttttgacacaatttgagatctatggtccatatactaaggctttgtttaggagtttcgatggaggggaaaggagggttttgaagagttggaatataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  6062903 gatttttgacacaatttgagatctatggtccatatactaaggctttgtttaggagtttcaatgcaggggaaaggagggttttgaagagttggaatataag 6063002  T
Q  101 ggtaaatggaaagatctttcacannnnnnnctagacttaattgcagttttaaccctctaagtatcacaattttgtgattttggctctctatnnnnnnnnc 200  Q
    |||||||| |||||||||| |||        ||||||||||||||||||| |||  |||||||||| ||||||||||||||||||||||||        |    
T  6063003 ggtaaatgaaaagatcttttacatttttttatagacttaattgcagttttgacctcctaagtatcataattttgtgattttggctctctataaaaaaaac 6063102  T
Q  201 aataacaaaacagcccctaaatttacccnnnnnnnnacaactttagccctcgagaccaattttgattggttcaatgcatacgtgacactgagatcaatca 300  Q
    ||||||||| ||||||||||||||||||        ||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  6063103 aataacaaatcagcccctaaatttaccc-tttttttacaactttaaccctcgaaaccaattttgattgattcaatgcatacgtgacaccgagatcaatca 6063201  T
Q  301 ccggccaaacaatact 316  Q
    ||||||||||| ||||    
T  6063202 ccggccaaacattact 6063217  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 16644974 - 16645022
Alignment:
Q  133 agacttaattgcagttttaaccctctaagtatcacaattttgtgatttt 181  Q
    |||||||||||||||||| ||||  ||||||||||||||||| ||||||    
T  16644974 agacttaattgcagttttgaccccttaagtatcacaattttgcgatttt 16645022  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 7323261 - 7323309
Alignment:
Q  136 cttaattgcagttttaaccctctaagtatcacaattttgtgattttggc 184  Q
    |||||||| |||||| ||||| ||||||||||||||||| |||||||||    
T  7323261 cttaattgtagttttgaccctttaagtatcacaattttgcgattttggc 7323309  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 35820164 - 35820116
Alignment:
Q  136 cttaattgcagttttaaccctctaagtatcacaattttgtgattttggc 184  Q
    |||||||||||||||  ||| |||||||||||||| ||| |||||||||    
T  35820164 cttaattgcagttttggccccctaagtatcacaatcttgcgattttggc 35820116  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 23564125 - 23564172
Alignment:
Q  137 ttaattgcagttttaaccctctaagtatcacaattttgtgattttggc 184  Q
    ||||||| |||||| ||||||||||||||||||| ||| |||||||||    
T  23564125 ttaattgtagttttgaccctctaagtatcacaatcttgcgattttggc 23564172  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 21355666 - 21355628
Alignment:
Q  132 tagacttaattgcagttttaaccctctaagtatcacaat 170  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  21355666 tagacttaattgcagttttgaccctctaagtctcacaat 21355628  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 201309 - 201355
Alignment:
Q  136 cttaattgcagttttaaccctctaagtatcacaattttgtgattttg 182  Q
    ||||||||||||||| |||| |||||||||||||| ||| |||||||    
T  201309 cttaattgcagttttgaccccctaagtatcacaatcttgcgattttg 201355  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 39706735 - 39706781
Alignment:
Q  136 cttaattgcagttttaaccctctaagtatcacaattttgtgattttg 182  Q
    ||||||||||||||| ||| ||||| ||| |||||||||||||||||    
T  39706735 cttaattgcagttttgaccatctaaatattacaattttgtgattttg 39706781  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 39238792 - 39238838
Alignment:
Q  136 cttaattgcagttttaaccctctaagtatcacaattttgtgattttg 182  Q
    ||||||||||||||| || |||||||||||||||| ||| |||||||    
T  39238792 cttaattgcagttttgactctctaagtatcacaatcttgcgattttg 39238838  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 18896837 - 18896789
Alignment:
Q  136 cttaattgcagttttaaccctctaagtatcacaattttgtgattttggc 184  Q
    |||||||||||||||  ||  |||||||||||||| |||||||||||||    
T  18896837 cttaattgcagttttggcctcctaagtatcacaatcttgtgattttggc 18896789  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 29919073 - 29919125
Alignment:
Q  132 tagacttaattgcagttttaaccctctaagtatcacaattttgtgattttggc 184  Q
    |||||||||| |||||||| |||| ||||||||||| || ||| |||||||||    
T  29919073 tagacttaatagcagttttgaccccctaagtatcacgatcttgcgattttggc 29919125  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 30491640 - 30491692
Alignment:
Q  132 tagacttaattgcagttttaaccctctaagtatcacaattttgtgattttggc 184  Q
    ||||||||||| || |||| |||| |||||||||||||| ||| |||||||||    
T  30491640 tagacttaattacatttttgaccccctaagtatcacaatcttgcgattttggc 30491692  T

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