View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15258_high_2 (Length: 243)

Name: NF15258_high_2
Description: NF15258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15258_high_2
NF15258_high_2
[»] chr3 (15 HSPs)
chr3 (19-223)||(7334992-7335196)
chr3 (29-129)||(2491315-2491415)
chr3 (14-129)||(2659858-2659973)
chr3 (29-134)||(2474340-2474445)
chr3 (19-190)||(9566543-9566711)
chr3 (14-134)||(2475880-2476000)
chr3 (29-129)||(9562694-9562794)
chr3 (14-128)||(13497416-13497530)
chr3 (29-102)||(2501414-2501487)
chr3 (29-129)||(7325128-7325228)
chr3 (30-128)||(2630570-2630668)
chr3 (52-129)||(2645088-2645165)
chr3 (42-130)||(755376-755464)
chr3 (29-129)||(7443725-7443825)
chr3 (24-127)||(747851-747954)
[»] scaffold0097 (1 HSPs)
scaffold0097 (29-129)||(33889-33989)
[»] chr6 (1 HSPs)
chr6 (45-99)||(24418217-24418271)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 7334992 - 7335196
Alignment:
Q  19 cagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaag 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7334992 cagagataacagaattaaagaacttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaag 7335091  T
Q  119 agtaggaagctgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgggttgtcctcatcgctaacgtgcgccatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7335092 agtaggaagctgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgggttgtcctcatcgctaacgtgcgccatt 7335191  T
Q  219 tctct 223  Q
    |||||    
T  7335192 tctct 7335196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 2491415 - 2491315
Alignment:
Q  29 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 128  Q
    |||||| || || ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  2491415 agaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaagagttggaagc 2491316  T
Q  129 t 129  Q
    |    
T  2491315 t 2491315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 2659858 - 2659973
Alignment:
Q  14 aggagcagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaac 113  Q
    |||| |||| |||| |||||| || || ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  2659858 aggatcagaaataagagaattgaaaaacttacaaacgcatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaa 2659957  T
Q  114 ggaagagtaggaagct 129  Q
    |||||||  |||||||    
T  2659958 ggaagagctggaagct 2659973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 2474445 - 2474340
Alignment:
Q  29 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 128  Q
    |||||||||||| |||||||| || |||||||||||  ||||||| || ||||||||||| |||||||||||||||| |||||| |||||||| |||||     
T  2474445 agaattaaagaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt 2474346  T
Q  129 tgggtt 134  Q
    ||||||    
T  2474345 tgggtt 2474340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 9566543 - 9566711
Alignment:
Q  19 cagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaag 118  Q
    |||| |||| |||||| ||| | || ||||| || ||||||||| ||||||||||||  ||||||||||| ||||||||||||| |||||| || |||||    
T  9566543 cagaaataagagaattgaaggacttgcagaggcaccgaagctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaag 9566642  T
Q  119 agtaggaagctgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgg 190  Q
    |||||||||||||    |||||||||||||||| |||||   |||| || ||||||| |  |||||||||||    
T  9566643 agtaggaagctgg---attccggtggttgtttccgccgtgcatgactgacaagtaaggaatatgtcgtttgg 9566711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 2476000 - 2475880
Alignment:
Q  14 aggagcagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaac 113  Q
    |||| |||| |||| |||||| || || ||||| || || |||||||||||||||||||| || || | |||| |||||||||||||||||||||||||     
T  2476000 aggatcagaaataagagaattgaaaaacttacaaaggcaccgaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaag 2475901  T
Q  114 ggaagagtaggaagctgggtt 134  Q
    |||||||| ||||||||||||    
T  2475900 ggaagagtgggaagctgggtt 2475880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 9562694 - 9562794
Alignment:
Q  29 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 128  Q
    |||||| ||||| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||| ||||||    
T  9562694 agaattgaagaactcacacagacatcgaagctgtacaagtaatttcaccggaagcctacagagaatttcaggcagaagatcaaaaggaagagttggaagc 9562793  T
Q  129 t 129  Q
    |    
T  9562794 t 9562794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 13497530 - 13497416
Alignment:
Q  14 aggagcagagataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaac 113  Q
    |||| ||||||| | ||||||||| || || ||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||| ||||||     
T  13497530 aggatcagagatcaaagaattaaaaaacttgcagaggcatcgaagttgtacaagtaacttcaccggaagcctacaaaggatctcaggcaggagatcaaat 13497431  T
Q  114 ggaagagtaggaagc 128  Q
    ||||| |||||||||    
T  13497430 ggaagtgtaggaagc 13497416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 2501487 - 2501414
Alignment:
Q  29 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggca 102  Q
    |||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  2501487 agaattgaagaacttacaaaggcatcgaagctgtactagtaatttcaccggaagcctgcacagaatctcaggca 2501414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 7325128 - 7325228
Alignment:
Q  29 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 128  Q
    |||||| ||||| |||||||| || |||||||||| |||||||||||| |||||||| || ||||||||||| | |||||| || |||||||| ||||||    
T  7325128 agaattgaagaacttacagaggcaccgaagctgtatgagtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaagc 7325227  T
Q  129 t 129  Q
    |    
T  7325228 t 7325228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 2630668 - 2630570
Alignment:
Q  30 gaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 128  Q
    ||||| ||||| ||||| || || |||||||| ||||||||||||||||||||| |||| ||||| |||| ||| ||||||||||||||| | ||||||    
T  2630668 gaattgaagaacttacaaaggcaccgaagctgcacgagtaatttcaccggaagcatacagagaatgtcagtcagaacatcaaacggaagaatcggaagc 2630570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 2645088 - 2645165
Alignment:
Q  52 atcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagct 129  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| |||| |||||  |||||||| |||||||    
T  2645088 atcgaagctgtataagtaatttcaccggaagcctacaaagaatctcaggaaggagatcaacaggaagagttggaagct 2645165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 755376 - 755464
Alignment:
Q  42 ttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagctg 130  Q
    |||||||| || || |||||| |||||||||| |  ||||||||||| |||||||||||||||||||| |  |||||||||||||||||    
T  755376 ttacagaggcaccgcagctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcgattggaagagtaggaagctg 755464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 7443725 - 7443825
Alignment:
Q  29 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 128  Q
    |||||| ||||| |||||||| || ||||| |||| |||||||||||| |||||||| || ||||||||||| |||| ||| || |||||||| ||||||    
T  7443725 agaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaagc 7443824  T
Q  129 t 129  Q
    |    
T  7443825 t 7443825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 747851 - 747954
Alignment:
Q  24 ataacagaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtag 123  Q
    |||| ||||| ||| || |||||||| |||||||| |||||||||||||| |  ||||||||||  |||| |||||| |  ||||| || |||||||| |    
T  747851 ataagagaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgg 747950  T
Q  124 gaag 127  Q
    ||||    
T  747951 gaag 747954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 33989 - 33889
Alignment:
Q  29 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 128  Q
    ||||| |||||| |||||||| ||||| || |||| ||||||||| |||||||||||||| ||||||||||| | || |||||| |||||||| ||||||    
T  33989 agaatcaaagaacttacagaggcatcggagttgtatgagtaatttgaccggaagcctacatagaatctcaggtatgagatcaaaaggaagagttggaagc 33890  T
Q  129 t 129  Q
    |    
T  33889 t 33889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 24418217 - 24418271
Alignment:
Q  45 cagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcag 99  Q
    |||||||| ||||| || | |||||| ||||| ||||||||||||||||||||||    
T  24418217 cagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcag 24418271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University