View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15259_high_2 (Length: 317)
Name: NF15259_high_2
Description: NF15259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15259_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 14243454 - 14243655
Alignment:
| Q |
104 |
aagtcaaaagtgtatctttagtttataaatcatatagaaagcacataccttttgtcctacaagttagagcatctccacagttgttgtttgtaatgatatt |
203 |
Q |
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| T |
14243454 |
aagtcaaaagtgtatctttagtt-ataaatcatatagaaagcacgtacattttgtcctacaagttagagcatctccacagttgttgtttgtaatgatatt |
14243552 |
T |
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| Q |
204 |
atatgcttctgctatcgagttgttgtttgtttatgaaaagtgtttttgttatgctattagttttattaattatgcaatgtgttaggattgttgggaaaat |
303 |
Q |
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| T |
14243553 |
atatgcttctgctatcgagttgttgtttgtttatgaaaagtgtttttgttatgctattagttttattaattatgcaatgtgttaggattgttgggaaaat |
14243652 |
T |
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| Q |
304 |
cat |
306 |
Q |
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| T |
14243653 |
cat |
14243655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 14243245 - 14243335
Alignment:
| Q |
1 |
aaactaggcataatgagagccctgctcaacaaaattaagcaacaactcactcagtcaacccaaactgtaacttaacaaagtcagacaccat |
91 |
Q |
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| T |
14243245 |
aaactaggcataatgagagccctgctcaaccaaattaagcaacaactcactcagtcaacccaaactgtaacttaacaaagtcagacaccat |
14243335 |
T |
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