View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1525_1D_high_3 (Length: 235)

Name: NF1525_1D_high_3
Description: NF1525_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1525_1D_high_3
NF1525_1D_high_3
[»] chr2 (2 HSPs)
chr2 (70-212)||(40859345-40859487)
chr2 (24-70)||(38282430-38282476)
[»] chr8 (6 HSPs)
chr8 (24-57)||(15883590-15883623)
chr8 (24-58)||(17948671-17948705)
chr8 (24-70)||(23347312-23347358)
chr8 (24-72)||(276575-276623)
chr8 (24-72)||(639226-639274)
chr8 (24-72)||(825032-825080)
[»] chr7 (4 HSPs)
chr7 (24-57)||(16277699-16277732)
chr7 (24-57)||(41336130-41336163)
chr7 (24-69)||(41858679-41858724)
chr7 (24-57)||(46555617-46555650)
[»] chr5 (4 HSPs)
chr5 (29-70)||(20546358-20546399)
chr5 (24-73)||(27020243-27020292)
chr5 (24-57)||(37940151-37940184)
chr5 (24-57)||(39588266-39588299)
[»] chr1 (1 HSPs)
chr1 (24-57)||(36307665-36307698)
[»] chr4 (2 HSPs)
chr4 (24-72)||(4652784-4652832)
chr4 (24-72)||(7487059-7487107)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 70 - 212
Target Start/End: Original strand, 40859345 - 40859487
Alignment:
Q  70 ctataaaaattacaaacagtaaacataaaaaagagagggataacaattagatcacatatatcatcacaattaaggaaattcatagcacgaacaacacgat 169  Q
    |||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40859345 ctattaaaattacaaaaaataaacataaaaaagagagggatgacaattagatcacatatatcatcacaattaaggaaattcatagcacgaacaacacaat 40859444  T
Q  170 gtgcgcttcaaactcatcaatgaggtattttgttgtataattt 212  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  40859445 gtgcgcttcaaactcatcaatgacgtattttgttgtataattt 40859487  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 38282430 - 38282476
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcacc 70  Q
    ||||||||||||||||||||||||||||| ||||  || ||||||||    
T  38282430 gaggataaattaccctctaaacaagagagggtaacgtaagtctcacc 38282476  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 15883590 - 15883623
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaa 57  Q
    ||||||||||||||||||||||||||||||||||    
T  15883590 gaggataaattaccctctaaacaagagagagtaa 15883623  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 17948671 - 17948705
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaat 58  Q
    ||||||||||||||||||||||||||||| |||||    
T  17948671 gaggataaattaccctctaaacaagagagggtaat 17948705  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 23347312 - 23347358
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcacc 70  Q
    |||||||||||||||| |||||||||||| |||| ||||| ||||||    
T  23347312 gaggataaattaccctttaaacaagagagggtaagatatgcctcacc 23347358  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 276623 - 276575
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcaccta 72  Q
    |||| ||||||||||| |||||||||||| ||||| || ||||||||||    
T  276623 gagggtaaattaccctataaacaagagagggtaatgtaggtctcaccta 276575  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 639226 - 639274
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcaccta 72  Q
    |||| ||||||||||| |||||||||||| ||||| || ||||||||||    
T  639226 gagggtaaattaccctataaacaagagagggtaatgtaggtctcaccta 639274  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 825032 - 825080
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcaccta 72  Q
    |||| ||||||||||| |||||||||||| ||||| || ||||||||||    
T  825032 gagggtaaattaccctataaacaagagagggtaatgtaggtctcaccta 825080  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 16277699 - 16277732
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaa 57  Q
    |||| |||||||||||||||||||||||||||||    
T  16277699 gagggtaaattaccctctaaacaagagagagtaa 16277732  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 41336163 - 41336130
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaa 57  Q
    ||||||||||||||||||||||||||||| ||||    
T  41336163 gaggataaattaccctctaaacaagagagggtaa 41336130  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 41858679 - 41858724
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcac 69  Q
    |||| |||||||||||||||||||||||| |||| ||| |||||||    
T  41858679 gagggtaaattaccctctaaacaagagagggtaacataggtctcac 41858724  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 46555617 - 46555650
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaa 57  Q
    ||||||||||||||||||||||||||||| ||||    
T  46555617 gaggataaattaccctctaaacaagagagggtaa 46555650  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 20546358 - 20546399
Alignment:
Q  29 taaattaccctctaaacaagagagagtaatatatgtctcacc 70  Q
    ||||||||||||||||||| |||| |||||||| ||||||||    
T  20546358 taaattaccctctaaacaaaagagggtaatataggtctcacc 20546399  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 27020243 - 27020292
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcacctat 73  Q
    |||| |||||||||||||||||||||||| ||||| || | |||||||||    
T  27020243 gagggtaaattaccctctaaacaagagagggtaatgtaggcctcacctat 27020292  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 37940151 - 37940184
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaa 57  Q
    |||| |||||||||||||||||||||||||||||    
T  37940151 gagggtaaattaccctctaaacaagagagagtaa 37940184  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 39588299 - 39588266
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaa 57  Q
    ||||||||||||||||||||||||||||| ||||    
T  39588299 gaggataaattaccctctaaacaagagagggtaa 39588266  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 36307698 - 36307665
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaa 57  Q
    ||||||||||||||||||||||||||||| ||||    
T  36307698 gaggataaattaccctctaaacaagagagggtaa 36307665  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 4652832 - 4652784
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcaccta 72  Q
    |||| |||||||||||||||||||||||| ||||| || | ||||||||    
T  4652832 gagggtaaattaccctctaaacaagagagggtaatgtaggcctcaccta 4652784  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 7487107 - 7487059
Alignment:
Q  24 gaggataaattaccctctaaacaagagagagtaatatatgtctcaccta 72  Q
    |||| |||||||||||||||||||||||| |||| ||| | ||||||||    
T  7487107 gagggtaaattaccctctaaacaagagagggtaacataggcctcaccta 7487059  T

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