View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1525_1D_low_10 (Length: 224)
Name: NF1525_1D_low_10
Description: NF1525_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_1D_low_10 |
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| [»] scaffold1052 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 34899975 - 34899804
Alignment:
| Q |
23 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
122 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
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| Q |
123 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacacgaaa |
194 |
Q |
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| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaa |
34899804 |
T |
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Target: scaffold1052 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1052
Description:
Target: scaffold1052; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 1634 - 1666
Alignment:
| Q |
192 |
aaactcaataaaatctcaaaacaacccctaaac |
224 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
1634 |
aaactctataaaatctcaaaacaacccctaaac |
1666 |
T |
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