View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1525_1D_low_2 (Length: 339)
Name: NF1525_1D_low_2
Description: NF1525_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_1D_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 80 - 339
Target Start/End: Complemental strand, 49866631 - 49866372
Alignment:
| Q |
80 |
gatggacatcatcaatatgtcatatttgccatttaacttcacctcctattctcaacatgtcatatttgcttactgcatctagtgaacctataatttgctg |
179 |
Q |
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| T |
49866631 |
gatggacatcatcaatatgtcatatttgccatttaacttcacctcctattctcaacata-catatttgcttactgcatctagtgaacctataatttgctg |
49866533 |
T |
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| Q |
180 |
aacctataatatctcacagcaaccaataatggatttgcttaagctttggtacattg-ctcaagtcatttttgaaaatagtattttctcgtactggtttga |
278 |
Q |
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| T |
49866532 |
aacctataatatctcgcagcaaccaataatggatttgcttaagctttggtacattggctcaagtcatttttgaaaatagtattttctcgtactggtttga |
49866433 |
T |
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| Q |
279 |
acagttacttattttaggctttctttgagagttttagaatatatgttctattattttaata |
339 |
Q |
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| T |
49866432 |
acagttacttattttaggctttctttgagagttttagaatatatgttctattattttaata |
49866372 |
T |
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