View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1525_1D_low_4 (Length: 276)

Name: NF1525_1D_low_4
Description: NF1525_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1525_1D_low_4
NF1525_1D_low_4
[»] chr5 (3 HSPs)
chr5 (7-105)||(41795253-41795351)
chr5 (180-268)||(41760622-41760710)
chr5 (180-261)||(41795423-41795504)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 41795253 - 41795351
Alignment:
Q  7 ggagagagaagttgagatgagaactaatgacgcagatgaacacagtgctgcagtagaggaaaaagaagtacaagaaaaggttgaaaagataatatttat 105  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41795253 ggagagagaagttgagatgagaactaatgaagcagatgaacacaatgctgcagtagaggaaaaagaagtacaagaaaaggttgaaaagataatatttat 41795351  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 41760622 - 41760710
Alignment:
Q  180 gagataaattgtcggaaattgattacattctaattgaagaaaacaacatagaagaagaggagcatgaagaagaagatgaagagtattat 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41760622 gagataaattgtcggaaattgattacattctaattgaagaaaacaacatagaagaagaggagcatgaagaagaagatgaagaatattat 41760710  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 180 - 261
Target Start/End: Original strand, 41795423 - 41795504
Alignment:
Q  180 gagataaattgtcggaaattgattacattctaattgaagaaaacaacatagaagaagaggagcatgaagaagaagatgaaga 261  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41795423 gagataaagggtcggaaattgattacattctaattgaagaaaacaacatagaagaagaggagcatgaagaagaagaagaaga 41795504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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