View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1525_2D_high_4 (Length: 363)
Name: NF1525_2D_high_4
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_high_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 75 - 363
Target Start/End: Complemental strand, 6966062 - 6965776
Alignment:
| Q |
75 |
aaagaaaaaataatctgttctgtcctttccttaatcctactattgttccaaaatgtccaccgaattctatagcttttaggcaagtgattcggatggtgat |
174 |
Q |
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| T |
6966062 |
aaagaaaaaataatatgttctgtcctttccttaatcctactattgttccaaaatgtccaccgaattctagagcttttaggcaagtgattcggatggtgat |
6965963 |
T |
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| Q |
175 |
tgaattaacaatgttattaaatcctgactcaataaacacttaatatgagagtttatatataaattgtttctaccatagaagagaaaatgtggggttaact |
274 |
Q |
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| T |
6965962 |
tgaattaacaatgttattaaatcctga--caataaacacttaatatgagagtttatatataaattgtttctaccatagaagagaaaatgtggggttaact |
6965865 |
T |
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| Q |
275 |
ctacaaaagctctgtatagatgatttctataaaaagnnnnnnnatagtttaacacttgaatacctgtagaaagtgctgctgtcatagat |
363 |
Q |
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| T |
6965864 |
ctacaaaagctctgtatagatgatttctataaaaagtttttttatagtttaacacttgaatacctgtagaaagtgctgctgtcatagat |
6965776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6966207 - 6966135
Alignment:
| Q |
1 |
tctagactaaatacattgacaccgtggttttgttgaagcctcaaagtgtagtatattgtgattttgtcaaact |
73 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6966207 |
tctagattaaatacattgacaccgtggtattgttgaagcctcaaagtgtagtatattgtgattttgtcaaact |
6966135 |
T |
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