View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1525_2D_low_10 (Length: 382)
Name: NF1525_2D_low_10
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_low_10 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 28172748 - 28172398
Alignment:
| Q |
1 |
catcataacaagagagttgaaagtatcaactttacttttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccattgcaacatatgta |
100 |
Q |
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| T |
28172748 |
catcataacaagagagttgaaagtatcaactttacctttgagtcaaccacaaaatcgaccctatcgaattgcatatccgccaaccattgcaacatatgta |
28172649 |
T |
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| Q |
101 |
gtaatccaagggcttcaccaatgtcaaccgggtattttgtggagaagctcaaagtttgagcaatcacatatgtaccatctttcaggtagtctcaatccat |
200 |
Q |
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| T |
28172648 |
gtaatccaagggcttcaccaatgtcaaccgggtattttgtggagaagctcaaagtttgagcaatcacat-----ccatctttcaggtagtctcaatccat |
28172554 |
T |
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| Q |
201 |
tctatcataaagtcttatagtaagcaacattgtcttagttcttggttctgtaacttaataatcatatgacatctcaacgataacaaaagaagaaaattaa |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | |
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| T |
28172553 |
tctatcat-aagtcttatagtaagcaacattgtcttatttctttgttctgtaacttaataatcatatgacatctcaacgataacaaaagaggaacattta |
28172455 |
T |
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| Q |
301 |
ttaaatgagtacaacttctccttaaattctttcaagaccttagatttaagtttttgaattggg |
363 |
Q |
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| T |
28172454 |
ttaaatgagta-----tctccttaaa-tctttcaagaccttagatttaagtttttgaattggg |
28172398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 930 - 1028
Alignment:
| Q |
246 |
ttctgtaacttaataatcatatgacatctcaacgataacaaaagaagaaaattaattaaatgagtacaacttctccttaaattctttcaagaccttaga |
344 |
Q |
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| T |
930 |
ttctgtaacttaataatcatatgacatctcaacgataagaaaagaggaacatttcttaaatgagtacaacttattcttaaattctttcaaaaccttaga |
1028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 10037638 - 10037511
Alignment:
| Q |
37 |
tttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccattgcaacatatgtagtaatccaagggcttcaccaatgtcaaccgggtatt |
136 |
Q |
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| T |
10037638 |
tttgagcccaccacaaaatcgacattatcgaattgcatagctaccaaccattgtaatgcatgtagcaatccaagggcttcactgacatcaatcgggtatt |
10037539 |
T |
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| Q |
137 |
ttgtggagaagctcaaagtttgagcaat |
164 |
Q |
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| T |
10037538 |
tcgtggagaagctcacagttttagcaat |
10037511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 10140733 - 10140600
Alignment:
| Q |
44 |
caaccacaaaatcgacactatcgaattgcatatctaccaaccattgcaacatatgtagtaatccaagggcttcaccaatgtcaaccgggtattttgtgga |
143 |
Q |
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|||||||||||||||| ||||| ||||| | | | ||||||||||||| || ||| |||||||| |||||||||| |||||||| |||||||| || |
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| T |
10140733 |
caaccacaaaatcgaccctatcagcctgcatgtttgcaaaccattgcaacacatatagcaatccaagagcttcaccaacgtcaaccgagtattttgcaga |
10140634 |
T |
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| Q |
144 |
gaagctcaaagtttgagcaatcacatatgtacca |
177 |
Q |
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| T |
10140633 |
gaagctcataatttgagcaagcacacatgtacca |
10140600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 32111775 - 32111697
Alignment:
| Q |
12 |
gagagttgaaagtatcaact-ttacttttgagtcaaccacaaaatcgacactatcgaattgcatatctaccaaccattg |
89 |
Q |
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|||| ||||||| |||| || |||| |||||||| |||||||||| ||| ||||||||||||| ||| |||||||||| |
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| T |
32111775 |
gagaattgaaagcatcagctattacctttgagtccgccacaaaatcaacattatcgaattgcatgtctgccaaccattg |
32111697 |
T |
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