View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1525_2D_low_15 (Length: 313)
Name: NF1525_2D_low_15
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_low_15 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 307
Target Start/End: Complemental strand, 31528112 - 31527820
Alignment:
| Q |
15 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31528112 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccggtgaactacaccttcgaagttcaagccatga |
31528013 |
T |
|
| Q |
115 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31528012 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
31527913 |
T |
|
| Q |
215 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaaga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31527912 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaaga |
31527820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 32591819 - 32592117
Alignment:
| Q |
15 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatga |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||| |
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|
| T |
32591819 |
gacatcaaacttgcaaagaaatcatgggttttccctggtcaatcttgcaccgtcttcgacctctcaccggtgaactataccttcgaagttcaagccatga |
32591918 |
T |
|
| Q |
115 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32591919 |
gtgctgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgatgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
32592018 |
T |
|
| Q |
215 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32592019 |
tcatgataaactctcgaatcatgtcaaggaactcgttcaaggaatcattgaaggggagacacgtgtcctcgctgcttcgatgaccatggaagaggtttt |
32592117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 51825515 - 51825217
Alignment:
| Q |
15 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
51825515 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttccactgtcttcgacctctcaccggtgaactacaccttcgaagttcaagccatga |
51825416 |
T |
|
| Q |
115 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
51825415 |
gtgccgaaaaactgcctttcgttcttcctgcggtcttcacaattggtcctcgtgttgacgatcacgaaagcctcctcaaatacgctaaactgatttcccc |
51825316 |
T |
|
| Q |
215 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51825315 |
tcatgataaactctcgaaccacgtcaaggaactcgttcaaggaatcattgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagaggtttt |
51825217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 37031505 - 37031207
Alignment:
| Q |
15 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatga |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||| | || |||||||| ||| | || || |||||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
37031505 |
gacatcaaacttgcaaagaaagcatggattcttcccggtcaatcctgctctgtcttggacctctcaccggtaaactacaccttcgaagttcaagctatga |
37031406 |
T |
|
| Q |
115 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
214 |
Q |
| |
|
| || || ||||| ||||| ||||| |||||||||||||| |||||||||||||| || ||| |||||||||| ||||||||||| ||||| ||||| || |
|
|
| T |
37031405 |
gcgcggagaaacttccttttgttctccccgctgtcttcactattggtcctcgtgtggatgataaggaaagccttctcaaatacgccaaacttatttcacc |
37031306 |
T |
|
| Q |
215 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
|||| || || ||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||| |
|
|
| T |
37031305 |
gcatgctagacactccaatcatgttaatgaacttgttcaaggaatcatcgaaggggagacacgtgtcctcgctgcttccatgacgatggaggaggtttt |
37031207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 313
Target Start/End: Complemental strand, 49208998 - 49208709
Alignment:
| Q |
24 |
cttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatgagtgccgaaa |
123 |
Q |
| |
|
|||| ||||||| |||||||||| || |||||||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49208998 |
cttgaaaagaaagcatggatttttccaggtcaatcctgcactgtcttcgacctctcaccggtgaactacaccttcgaagttcaagccatgagtgctgaaa |
49208899 |
T |
|
| Q |
124 |
aactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccctcatgataa |
223 |
Q |
| |
|
|||| |||||||| || || || ||||||||||| |||||||||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
49208898 |
aactccctttcgtcctccctgccgtcttcacaatcggtcctcgtgttgacgattacgaaagcctcctcaaatatgccaaactaatttcccctcatgataa |
49208799 |
T |
|
| Q |
224 |
actctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||| |||| |
|
|
| T |
49208798 |
actctccaatcacgttaatgaacttgttcaaggaatcatcgaaggcgagacacgtgtcctcgttgcttcaatgacgatggaagaggtttt |
49208709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 49188994 - 49188696
Alignment:
| Q |
15 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatga |
114 |
Q |
| |
|
||||||||||| ||||||| |||||||||| || |||||||| ||||| || || |||||||| || || ||||||||||| ||||||||||| |||| |
|
|
| T |
49188994 |
gacatcaaactcaaaaagaaagcatggatttttcccggtcaatcctgcactgtcttggacctctcaccggtaaactacacctttgaagttcaagctatga |
49188895 |
T |
|
| Q |
115 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
214 |
Q |
| |
|
||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || |
|
|
| T |
49188894 |
gtgccgagaaacttccttttgttctccccgccgtcttcacaattggtcctcgtgttgacgatcaggaaagccttctcaaatacgccaaacttatttcacc |
49188795 |
T |
|
| Q |
215 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
||||||| || ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
49188794 |
tcatgatcgacactccaatcacgttaatgaactcgttcaaggaatcatcgaaggggagacacgtgtcctcgctgcttccatgaccatggaggaggtttt |
49188696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 29 - 313
Target Start/End: Complemental strand, 49213833 - 49213549
Alignment:
| Q |
29 |
aaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatgagtgccgaaaaactg |
128 |
Q |
| |
|
||||||| ||||||||||||| |||||||| ||||| || |||||||| || || |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49213833 |
aaagaaagcatggattttccccggtcaatcatgcacggtcttcgacctttcaccggtgaactataccttcgaagttcaagccatgagtgccgaaaaactc |
49213734 |
T |
|
| Q |
129 |
cctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccctcatgataaactct |
228 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| || || |
|
|
| T |
49213733 |
cctttcgttctccctgctgtcttcactatcggtcctcgtgttgacgatcaggaaagcctcctcaaatacgccaaacttatttcaccccatgatagacact |
49213634 |
T |
|
| Q |
229 |
cgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| ||| |||| |
|
|
| T |
49213633 |
ccaatcatgttaatgaacttgttcaaggaatcattgaaggtgagacacgtgtcctagctgcctccatgactatggaggaggtttt |
49213549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 27 - 313
Target Start/End: Complemental strand, 49192718 - 49192432
Alignment:
| Q |
27 |
gcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatgagtgccgaaaaac |
126 |
Q |
| |
|
||||||||| |||||||| | || |||||||| | | |||| ||||||||||| || || || |||||||| ||||||||||| ||||| || || |||| |
|
|
| T |
49192718 |
gcaaagaaagcatggattctacccggtcaatcctactccgtcttcgacctctcacctgtaaattacacctttgaagttcaagcaatgagcgcagagaaac |
49192619 |
T |
|
| Q |
127 |
tgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccctcatgataaact |
226 |
Q |
| |
|
| ||||| ||||| |||||||||||||| || ||||||||||| || ||| |||||||||| ||||||||||| ||||| ||||| || || |||||||| |
|
|
| T |
49192618 |
ttccttttgttctccccgctgtcttcactatcggtcctcgtgtggatgataaggaaagccttctcaaatacgccaaacttatttcaccgcacgataaact |
49192519 |
T |
|
| Q |
227 |
ctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
49192518 |
ctccaatcatgttaaggaactcgttcaaggaatcatcgaaggcgagacacgtgtcctcgctgcatcaatgaccatggaagaggtttt |
49192432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 49203831 - 49203533
Alignment:
| Q |
15 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatga |
114 |
Q |
| |
|
||||| ||||||||||||||| |||||||| | || ||||| || ||| |||| || |||||||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
49203831 |
gacataaaacttgcaaagaaagcatggattattcccggtcagtcctgctccgtcttggacctctcaccggtaaactacaccttcgaagttcaagctatga |
49203732 |
T |
|
| Q |
115 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
214 |
Q |
| |
|
||||||| ||||| ||||| ||||| || || || ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| || |
|
|
| T |
49203731 |
gtgccgagaaacttccttttgttctccctgccgttttcactattggtcctcgtgttgacgatcaggaaagccttctcaaatacgccaaacttatttcacc |
49203632 |
T |
|
| Q |
215 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagagatttt |
313 |
Q |
| |
|
|||||| |||||| ||||| ||||| ||||| |||||||||||||| ||||| || |||||||| || |||||||| ||||||||||| ||| |||| |
|
|
| T |
49203631 |
acatgatcgactctccaatcatgttaatgaacttgttcaaggaatcattgaaggggaaacacgtgtactggctgcttccatgaccatggaggaggtttt |
49203533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 29622867 - 29622979
Alignment:
| Q |
201 |
aaactgatttcccctcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgacca |
300 |
Q |
| |
|
||||| |||||||| || ||||||||||| |||||||| || ||||| ||||| |||| ||||||||||||||||| ||||||||| ||||| ||||| | |
|
|
| T |
29622867 |
aaactaatttccccacacgataaactctcaaatcacgtcaatgaacttgttcagggaaacatcgaaggtgagacacatgtcctcgcagcttccatgacta |
29622966 |
T |
|
| Q |
301 |
tggaagagatttt |
313 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
29622967 |
tggaagaggtttt |
29622979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 29622725 - 29622814
Alignment:
| Q |
28 |
caaagaaatcatggatt-ttccctggtcaatcttgcaccgttttcgacctctctc--cagtgaactacaccttcgaagttcaagccatgag |
115 |
Q |
| |
|
||||||||||||| ||| ||||| || ||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
29622725 |
caaagaaatcatgaattcttcccagg-caatcctgcaccgtcttcgacctctctcaccggtgaactacaccttcgaagttcaagcaatgag |
29622814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 26757372 - 26757080
Alignment:
| Q |
15 |
gacatcaaacttgcaaagaaatcatggattttccctggtcaatcttgcaccgttttcgacctctctccagtgaactacaccttcgaagttcaagccatga |
114 |
Q |
| |
|
||||||||||| | ||| ||| |||||||| | || ||| |||| | || ||||||| || |||| ||||| |||||||||||| |||||||||| |||| |
|
|
| T |
26757372 |
gacatcaaactcgtaaacaaagcatggattcttcccggtaaatcgtacagcgttttcaac-tctcaccagtaaactacaccttcaaagttcaagcaatga |
26757274 |
T |
|
| Q |
115 |
gtgccgaaaaactgcctttcgttcttcccgctgtcttcacaattggtcctcgtgttgacgatcaggaaagcctcctcaaatacgctaaactgatttcccc |
214 |
Q |
| |
|
|||| |||||||| || |||||||| |||||||| ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| | |
|
|
| T |
26757273 |
gtgctgaaaaactcccattcgttctccccgctgtgttcactataggtcctcgtgtggacgatcatgaaagccttctcaaatacgccaaactaatttcaca |
26757174 |
T |
|
| Q |
215 |
tcatgataaactctcgaatcacgttaaggaactcgttcaaggaatcatcgaaggtgagacacgtgtcctcgctgcttcgatgaccatggaagag |
308 |
Q |
| |
|
||||||| || ||| ||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26757173 |
gcatgatagacactccaatcacgttaatgaacttgttcaaggaatcatcgaaagcgagacacgtgtcctcgctgcttccatgactatggaagag |
26757080 |
T |
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