View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1525_2D_low_16 (Length: 281)
Name: NF1525_2D_low_16
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 26344978 - 26345240
Alignment:
| Q |
1 |
gagtttatgcaaacacatatgagagctatattgtttatagcctacattacttgctatgcaagttacttggtatacaagtcatctcttatcgctacgtttc |
100 |
Q |
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| T |
26344978 |
gagtttatgcaaacacatatgagagctaaattgtttatagcctacattacttgcaatgcaagttacttggtatacaagtcatctcttatcgctacgtttc |
26345077 |
T |
|
| Q |
101 |
gaactaacttcataacatgaattaactacttctaataggaaatgggtaagaatccataggttctcactttgtaaccgaaattatattgtttcattaatag |
200 |
Q |
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| T |
26345078 |
gaactaacttcataacatgaattaactacttctaataggtaatgggtaagaatccataggttctcactttgtaaccgaaattatattgtttcattaatag |
26345177 |
T |
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| Q |
201 |
tggagctcctctcaactgacgatgtatgtcacattggccaaacctcgttaccattgtccatat |
263 |
Q |
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| T |
26345178 |
aggagctcctctcaactgacgatgtatgtcacattggccaaacctcgttaccattgttcatat |
26345240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 31932273 - 31932207
Alignment:
| Q |
34 |
tttatagcctacattacttgctatgcaagttacttggtatacaagtcatctcttatcgctacgtttc |
100 |
Q |
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||||||| |||||||||||| |||||||||||||||| | ||| || ||| ||||| ||||| |||| |
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| T |
31932273 |
tttatagtctacattacttgttatgcaagttacttgggaaacatgttatcgcttatagctacttttc |
31932207 |
T |
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