View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1525_2D_low_2 (Length: 1339)

Name: NF1525_2D_low_2
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1525_2D_low_2
NF1525_2D_low_2
[»] chr4 (3 HSPs)
chr4 (19-1312)||(41231497-41232789)
chr4 (1167-1319)||(21386911-21387064)
chr4 (1148-1195)||(12296359-12296407)
[»] chr7 (2 HSPs)
chr7 (1088-1284)||(26385921-26386117)
chr7 (1222-1305)||(28534245-28534330)
[»] chr2 (4 HSPs)
chr2 (1110-1298)||(30598841-30599030)
chr2 (1100-1192)||(30966986-30967079)
chr2 (1260-1304)||(23650544-23650588)
chr2 (1004-1081)||(34173067-34173144)
[»] chr5 (3 HSPs)
chr5 (28-138)||(4264193-4264303)
chr5 (1162-1316)||(17853777-17853936)
chr5 (1202-1306)||(26367733-26367839)
[»] chr3 (5 HSPs)
chr3 (1167-1312)||(823146-823296)
chr3 (1248-1298)||(16266021-16266072)
chr3 (1254-1316)||(25594254-25594316)
chr3 (1102-1243)||(13018107-13018252)
chr3 (1254-1323)||(45354645-45354715)
[»] chr8 (7 HSPs)
chr8 (1254-1315)||(15906983-15907044)
chr8 (1254-1308)||(25184873-25184927)
chr8 (1011-1081)||(13422042-13422112)
chr8 (1042-1079)||(4892225-4892262)
chr8 (1004-1081)||(25485402-25485479)
chr8 (1004-1081)||(29459234-29459311)
chr8 (1028-1081)||(44746815-44746868)
[»] chr6 (4 HSPs)
chr6 (1231-1316)||(32150327-32150412)
chr6 (979-1079)||(1474103-1474203)
chr6 (1111-1228)||(20500081-20500199)
chr6 (1254-1312)||(33968346-33968404)
[»] chr1 (4 HSPs)
chr1 (1162-1312)||(33383547-33383699)
chr1 (1004-1081)||(29510454-29510531)
chr1 (1141-1193)||(38548910-38548963)
chr1 (1004-1081)||(46682696-46682773)


Alignment Details
Target: chr4 (Bit Score: 1045; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 1045; E-Value: 0
Query Start/End: Original strand, 19 - 1312
Target Start/End: Complemental strand, 41232789 - 41231497
Alignment:
Q  19 aaaactacctgatagcaagcaccgcagccagtgccattcttccatagcttagacacgccagcaacattgccatcattcactgtccttccatattctccaa 118  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41232789 aaaactacctgatagcatgcaccgcagccagtgccattcttccatagcttagacacaccagcaacattgccatcattcactgtccttccatattctccaa 41232690  T
Q  119 agccacaagctccccctaaagtatatatttcaattcataaatcatgttatatttgttactttcattttcaatgtagttttagttaatctttttaaaatgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41232689 agccacaagctccccctaaagtatatatttcaattcataaatcatgttatatttgttactttcattttcaatgtagttttagttaatctttttaaaatgt 41232590  T
Q  219 acccttgaattagtatcgcatgcatcacttcaaaattattattttttcagtttgcatttatgacaatgataacacaccaacaatcttgnnnnnnnnnnnn 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||                
T  41232589 acccttgaattagtatcgcatgcatcacttcaaaattattattttttcagtttgcatttatgacaatggtaacacaccaacaatcttgacaaaaaaaa-- 41232492  T
Q  319 ncacaccaacgatt-aataagcataatttagtaaaataattcttttcttttccnnnnnnnnnnnnnacatgcgtaaaattgtcaaatgcgacatttattg 417  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| |||||||||    
T  41232491 -cacaccaacgatttaataagcataatttagtaaaataattcttttcttttccttttttttttt--acatgcgtaaaattgtcaaatgcggcatttattg 41232395  T
Q  418 tgcgacataacactagcaaagtgaacattttttagtgcatacaatttatttgttgaaacacatgacacataaagaaattaaatatcaagtttaggtagaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41232394 tgcgacataacactagcaaagtgaacattttttagtgcatacaatttatttgttgaaacacatgacacataaagaaattaaatatcaagtttaggtagaa 41232295  T
Q  518 gaggaggatcatacttggagtcccatagcaatctgggctaccgtaatatgttgctctggagtcagtaaaggagtcttgtgaggtacagagctgaggtaag 617  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41232294 gaggaggataatacttggagtcccatagcaatctgggctaccgtaatatgttgctctggagtcagtaaaggagtcttgtgaggtacagagctgaggtaag 41232195  T
Q  618 agcaatatgatacaaacaaggccaagttggtgcttaaaactgagttccatgttcaaatgacaaatactcagatttaaagagtggacgaattaagcaaatg 717  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41232194 agcagtatgatacaaacaaggccaagttggtgcttaaaactgagttccatgttcaaatgacaaatactcagatttaaagagtggactaattaagcaaatg 41232095  T
Q  718 aactaaagtatatgaagcaagaataacaatcaaaggtatacaattggctttatgagatgggaagctaagatatgggatggggtcatatttatagtacaca 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41232094 aactaaagtatatgaagcaagaataacaatcaaaggtatacaattggctttatgagatgggaagctaagatatgggatggggtcatatttatagtacaca 41231995  T
Q  818 ggccatgcttagaagtacatacatgtaggagtctactttttctcccatttgggactattatattcgacaacaattttcaactatagcctggatggttaat 917  Q
    |||||||||| ||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41231994 ggccatgcttgga-------------aggagtctactttttctcccatttgggactattatattcgacaacaattttcaactatagcctggatggttaat 41231908  T
Q  918 aagtttaaatatgttgtttatttggtctagtcgatggttgattttcaactcattaacc---------gaagagtaaattaca-------gtcttctcttg 1001  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||        ||||||||||    
T  41231907 aagtttaaatatgttgtttatttggtctagtcgatggttgattttcaactcattaaccacatactttcaagagtaaattacacagtcttctcttctcttg 41231808  T
Q  1002 agagatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattagaggggtgttagtataggacct 1101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  41231807 agagatgtttaaattacactaccttatcctcttgtgtcaaaatatacactccccaactcttttatgcaaaacatattagaggggtgttagtataggacct 41231708  T
Q  1102 tttttggatgtggctcagttatggtgatgtgcacagattgtttgacttagaggggtgttatttgaggtgagtagtggcgatgggtggttatggaatcatt 1201  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41231707 tttttggatgtggctcagttatggtgatgtgcacaggttgtttgacttagaggggtgttatttgaggtgagtagtggcgatgggtggttatggaatcatt 41231608  T
Q  1202 tttagtggtagttcgcgatggagtctgtcttaggaggtgaagattatttggtggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttggg 1301  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  41231607 tttagtggtagtttgcgatggagtctgttttaggaggtgaagattatttggtggtgttgtcctcatgggtgttaaaggtagggcttggttaggtgttggg 41231508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 1167 - 1319
Target Start/End: Complemental strand, 21387064 - 21386911
Alignment:
Q  1167 ggtgagtagtggcgatgggtggttatgga-atcatttttagtggtagttcgcgatggagtctgtcttaggaggtgaagattatttggtggtgtcgtcctc 1265  Q
    ||||||||||||||||||||||||||||| ||||| || || ||| ||||||| |||||| ||  ||||||||||||  |||||||||||||| ||||||    
T  21387064 ggtgagtagtggcgatgggtggttatggatatcatattcagcggtggttcgcggtggagtatgatttaggaggtgaactttatttggtggtgttgtcctc 21386965  T
Q  1266 atgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgtttttatg 1319  Q
    ||||| ||||||||||||| || ||| ||||||| ||||||| |||||||||||    
T  21386964 atgggcgttgaaggtagggttttgtttggtgttgtgtgtatgagtgtttttatg 21386911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1148 - 1195
Target Start/End: Original strand, 12296359 - 12296407
Alignment:
Q  1148 ttagaggggtgttatttgagg-tgagtagtggcgatgggtggttatgga 1195  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||    
T  12296359 ttagaggggtgttattttgggatgagtagtggcgatgggtggttatgga 12296407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 1088 - 1284
Target Start/End: Complemental strand, 26386117 - 26385921
Alignment:
Q  1088 ttagtataggaccttttttggatgtggctcagttatggtgatgtgcacagattgtttgacttagaggggtgttatttgaggtgagtagtggcgatgggtg 1187  Q
    ||||||||||||||||||||| |||| ||||| ||||| ||||   |||  |||||||| ||||||||||||| | |||||||||||||||||||| |||    
T  26386117 ttagtataggaccttttttgggtgtgactcagctatggagatgcatacaagttgtttgatttagaggggtgttttgtgaggtgagtagtggcgatgagtg 26386018  T
Q  1188 gttatgga-atcatttttagtggtagttcgcgatggagtctgtcttaggaggtgaagattatttggtggtgtcgtcctcatgggtgttgaaggtaggg 1284  Q
    |||||||| |||||||| || ||||||||  ||| ||||  || |||||||| |||  ||||||||||||||  ||||||||||||||||||||||||    
T  26386017 gttatggatatcattttcagcggtagttcatgattgagttcgt-ttaggaggggaaacttatttggtggtgttttcctcatgggtgttgaaggtaggg 26385921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1222 - 1305
Target Start/End: Complemental strand, 28534330 - 28534245
Alignment:
Q  1222 gagtctgtcttaggaggtgaagattattt-ggtgg-tgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgta 1305  Q
    |||||||| ||||| ||||| | |||||| ||||| ||| ||||||| ||||||||||||||||| |||| ||| ||||| |||||    
T  28534330 gagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgttgaaggtagggtttggctagttgttgtgtgta 28534245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 9e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 1110 - 1298
Target Start/End: Complemental strand, 30599030 - 30598841
Alignment:
Q  1110 tgtggctcagttatggtgatgtgcacagattgtttgacttagaggggtgttatttgaggtgagtagtggcgatgggtggttatgga-atcatttttagtg 1208  Q
    |||| ||||| || ||||||| | || | |||||||| ||||||||||||| ||||   ||||||| ||| |||  |||||||||| |||| ||| || |    
T  30599030 tgtgactcagctacggtgatgcgtacgggttgtttgatttagaggggtgttttttggtatgagtagcggctatgaatggttatggatatcactttcagcg 30598931  T
Q  1209 gtagttcgcgatggagtctgtcttaggaggtgaagattatttggtggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgtt 1298  Q
    |||||| ||||||| |||||  |||| |||||||| ||||||||||| || ||||||| ||||||| || |||||| |||||||||||||    
T  30598930 gtagtttgcgatggtgtctgatttagaaggtgaagtttatttggtggggttgtcctcaagggtgttaaaagtagggattggttaggtgtt 30598841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1100 - 1192
Target Start/End: Complemental strand, 30967079 - 30966986
Alignment:
Q  1100 cttttttggatgtggctcagttatggtgatgtgcacagattgtttgacttagaggggtg-ttatttgaggtgagtagtggcgatgggtggttat 1192  Q
    ||||||||| ||| |||||| |||||||||| | |||   ||||||| ||||||||||| || |||  |||||||||| |||||||||||||||    
T  30967079 cttttttgggtgtcgctcagctatggtgatgagaacatggtgtttgatttagaggggtgatttttttgggtgagtagtagcgatgggtggttat 30966986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1260 - 1304
Target Start/End: Original strand, 23650544 - 23650588
Alignment:
Q  1260 gtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgt 1304  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||    
T  23650544 gtcctcatgggtgttgaaagcagggcttggttaggtgttgtgtgt 23650588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1004 - 1081
Target Start/End: Original strand, 34173067 - 34173144
Alignment:
Q  1004 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 1081  Q
    ||||| || |||||||||||| |  |||||| ||| |||||||||||||||||   || |||| ||||||||||||||    
T  34173067 agatgcttgaattacactaccctcccctcttatgttaaaatatacactcccctcccctcttattcaaaacatattaga 34173144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 4264193 - 4264303
Alignment:
Q  28 tgatagcaagcaccgcagccagtgccattcttccatagcttagacacgccagcaacattgccatcattcactgtccttccatattctccaaagccacaag 127  Q
    |||||||| ||||| || ||||  |||||||||||||||  ||||||||| || |||||||||||||| ||||||  ||| || || ||| |||||||||    
T  4264193 tgatagcatgcaccacaaccagatccattcttccatagccaagacacgcctgcgacattgccatcatttactgtctgtccgtaatcaccatagccacaag 4264292  T
Q  128 ctccccctaaa 138  Q
    ||||| |||||    
T  4264293 ctccctctaaa 4264303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1162 - 1316
Target Start/End: Complemental strand, 17853936 - 17853777
Alignment:
Q  1162 tttgaggtgagtagtggcgatgggtggttatgga-atcattttt-agtggtagtt-cgcgatggagtctgtcttaggaggtgaagattattt-ggtgg-t 1256  Q
    |||| |||||||||||| |||||||||||||||| ||| ||||| |||| | ||| ||  | ||||||||| |||| |||||| | |||||| ||||| |    
T  17853936 tttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgtttcgtaaaggagtctgttttagaaggtgatgtttattttggtgggt 17853837  T
Q  1257 gtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgttttt 1316  Q
    ||  |||||||||||| ||||||||||| |||| ||||||||| | |||||| |||||||    
T  17853836 gttttcctcatgggtggtgaaggtagggtttggctaggtgttgtgagtatggatgttttt 17853777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1202 - 1306
Target Start/End: Complemental strand, 26367839 - 26367733
Alignment:
Q  1202 tttagtggtagttcgcgatggagtctgtcttaggaggtgaagat-tatttggtgg-tgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttg 1299  Q
    ||||||||| |||||||||||||| || |||||| ||||||| |  ||||| ||| ||| || ||||||||||||||||| ||| ||| |||| ||| ||    
T  26367839 tttagtggtcgttcgcgatggagtttgacttaggtggtgaagttggatttgatggttgttgttctcatgggtgttgaaggcaggacttagttaagtgatg 26367740  T
Q  1300 ggtgtat 1306  Q
     ||||||    
T  26367739 tgtgtat 26367733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1167 - 1312
Target Start/End: Complemental strand, 823296 - 823146
Alignment:
Q  1167 ggtgagtagtggcgatgggtggttatgga-atcattttt-agtggtagttc-gcgatggagtctgtcttaggaggtgaagattattt-ggtgg-tgtcgt 1261  Q
    ||||||||| ||||| ||||||||||||| ||| ||||| |||||| |||  | |||||||| ||| ||||| ||||||| | |||| ||||| ||  ||    
T  823296 ggtgagtagaggcgaagggtggttatggatatcgtttttcagtggttgttttgtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgt 823197  T
Q  1262 cctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgt 1312  Q
    ||||||||||||||||||||||| ||| ||||| |||| ||||| ||||||    
T  823196 cctcatgggtgttgaaggtaggggttgattaggggttgtgtgtaagggtgt 823146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1248 - 1298
Target Start/End: Original strand, 16266021 - 16266072
Alignment:
Q  1248 tttggtgg-tgtcgtcctcatgggtgttgaaggtagggcttggttaggtgtt 1298  Q
    |||||||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  16266021 tttggtggatgttgtcctcatgggtgttgaaggtagggtttggttaggtgtt 16266072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1254 - 1316
Target Start/End: Complemental strand, 25594316 - 25594254
Alignment:
Q  1254 ggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgttttt 1316  Q
    ||||| |||||||||||||||||||||| || |||| ||| ||||||||| | ||||||||||    
T  25594316 ggtgttgtcctcatgggtgttgaaggtatggtttggctagatgttgggtgcaagggtgttttt 25594254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1102 - 1243
Target Start/End: Complemental strand, 13018252 - 13018107
Alignment:
Q  1102 tttttggatgtggctcagttatggtgatgtgcacagattgtttgacttagaggggtgttatttga-ggtgagtagtggcgatgggtggttatgga-atca 1199  Q
    ||||| |||||||||||  |||||||||| | ||||  ||||||| ||||| ||| ||| ||| | ||||||||||||| ||||||| | ||||| ||||    
T  13018252 tttttagatgtggctcaactatggtgatgaggacagggtgtttgatttagatgggcgttcttttagggtgagtagtggcaatgggtgatcatggatatca 13018153  T
Q  1200 -tttttagtggtag-ttcgcgatggagtctgtcttaggaggtgaag 1243  Q
     ||||||||||| | || | |||||||||||| ||||| |||||||    
T  13018152 ttttttagtggttgttttgtgatggagtctgttttaggtggtgaag 13018107  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1254 - 1323
Target Start/End: Complemental strand, 45354715 - 45354645
Alignment:
Q  1254 ggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgt-ttttatgatgt 1323  Q
    ||||| ||||| || |||||||||||||||| |||| |||||| || ||||| |||||| |||||||||||    
T  45354715 ggtgttgtcctaataggtgttgaaggtagggtttggctaggtgctgtgtgtaggggtgtcttttatgatgt 45354645  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1254 - 1315
Target Start/End: Original strand, 15906983 - 15907044
Alignment:
Q  1254 ggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgtttt 1315  Q
    ||||| ||||||||||||||||||||||||| | || ||||||||| ||||| |||||||||    
T  15906983 ggtgtggtcctcatgggtgttgaaggtagggttgggctaggtgttgtgtgtaggggtgtttt 15907044  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1254 - 1308
Target Start/End: Complemental strand, 25184927 - 25184873
Alignment:
Q  1254 ggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgg 1308  Q
    ||||| ||||||||| |||||||||||||||||||| ||||| ||| ||||||||    
T  25184927 ggtgttgtcctcatgagtgttgaaggtagggcttggctaggtattgtgtgtatgg 25184873  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1011 - 1081
Target Start/End: Complemental strand, 13422112 - 13422042
Alignment:
Q  1011 taaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 1081  Q
    ||||||||||| || |  |||||| ||| |||||||||||||||||  ||| |||| ||||||||||||||    
T  13422112 taaattacactcccctcccctcttatgttaaaatatacactcccctcctctcttattcaaaacatattaga 13422042  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1042 - 1079
Target Start/End: Complemental strand, 4892262 - 4892225
Alignment:
Q  1042 aatatacactcccctattcttttatgcaaaacatatta 1079  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  4892262 aatatacaatcccctattcttttatgtaaaacatatta 4892225  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1004 - 1081
Target Start/End: Complemental strand, 25485479 - 25485402
Alignment:
Q  1004 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 1081  Q
    |||||||| ||||||||| || |  ||||||  || ||||||||||||||||||  || |||| ||||||||||||||    
T  25485479 agatgtttgaattacactcccctcccctcttaagttaaaatatacactcccctaccctcttattcaaaacatattaga 25485402  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1004 - 1081
Target Start/End: Complemental strand, 29459311 - 29459234
Alignment:
Q  1004 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 1081  Q
    ||||| || ||||||||| || | ||||||| ||| ||||||| |||||||||  ||| |||| ||||||||||||||    
T  29459311 agatgcttgaattacactcccctctcctcttatgttaaaatatccactcccctcatctcttattcaaaacatattaga 29459234  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1028 - 1081
Target Start/End: Complemental strand, 44746868 - 44746815
Alignment:
Q  1028 tcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 1081  Q
    ||||||| ||| ||||||||||||||||| | || |||| ||||||||||||||    
T  44746868 tcctcttatgttaaaatatacactcccctctcctcttattcaaaacatattaga 44746815  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 1231 - 1316
Target Start/End: Original strand, 32150327 - 32150412
Alignment:
Q  1231 ttaggaggtgaagattatttggtggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgttttt 1316  Q
    ||||||| ||||  ||||||| |||||| ||| || ||| ||||||||||||||||| |||| |||||| |||||||| |||||||    
T  32150327 ttaggagttgaaatttatttgatggtgttgtcttcgtggatgttgaaggtagggcttagttatgtgttgtgtgtatggatgttttt 32150412  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 979 - 1079
Target Start/End: Original strand, 1474103 - 1474203
Alignment:
Q  979 gagtaaattacagtcttctcttgagagatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatatt 1078  Q
    |||||||||| | || || ||||||| ||| ||||||||||| ||| |  |||||||||||||||||||||||| |||   || ||| ||||||||||||    
T  1474103 gagtaaattagactcctcacttgagaaatggttaaattacaccaccctcacctcttgtgtcaaaatatacactctcctcccctcttaagcaaaacatatt 1474202  T
Q  1079 a 1079  Q
    |    
T  1474203 a 1474203  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1111 - 1228
Target Start/End: Original strand, 20500081 - 20500199
Alignment:
Q  1111 gtggctcagttatggtgatgtgcacagattgtttgacttagaggggtgttatttgaggtgagtagtggcgatgggtggttatgga-atcatttttagtgg 1209  Q
    |||||||||||||| |||||||   ||| ||| | | |||||||| |||| |||| ||||||||||||||| | |||||||| || ||| |||| || ||    
T  20500081 gtggctcagttatgatgatgtgattagaatgtgttatttagagggatgttttttggggtgagtagtggcgaggagtggttatcgatatcgttttcagcgg 20500180  T
Q  1210 tagttcgcgatggagtctg 1228  Q
    | || || |||||||||||    
T  20500181 tggtgcgtgatggagtctg 20500199  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1254 - 1312
Target Start/End: Complemental strand, 33968404 - 33968346
Alignment:
Q  1254 ggtgtcgtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgt 1312  Q
    ||||| ||||||| ||||||||||||||||| |||| |||||| || ||||| ||||||    
T  33968404 ggtgttgtcctcaagggtgttgaaggtagggtttggctaggtgatgtgtgtaggggtgt 33968346  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1162 - 1312
Target Start/End: Complemental strand, 33383699 - 33383547
Alignment:
Q  1162 tttgaggtgagtagtggcgatgggtggttatggaatcatttttagtggtagttcgcgatggagtctgtcttaggaggtgaagattattt-ggtggt-gtc 1259  Q
    |||| ||||||||||||||||||||||||||||| || |||  | |||| ||| ||||  |||||||  ||  | |||||   |||||| |||||| ||     
T  33383699 tttggggtgagtagtggcgatgggtggttatggattcgtttccaatggtggtttgcgaaagagtctgattttagtggtgagatttattttggtggttgtt 33383600  T
Q  1260 gtcctcatgggtgttgaaggtagggcttggttaggtgttgggtgtatgggtgt 1312  Q
    ||| |||||||||||||| | || |||||||||||||||| ||||||| ||||    
T  33383599 gtcgtcatgggtgttgaaagcagagcttggttaggtgttgtgtgtatgagtgt 33383547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1004 - 1081
Target Start/End: Complemental strand, 29510531 - 29510454
Alignment:
Q  1004 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 1081  Q
    |||||||| ||||||||| || |  |||||| ||| |||||||||||||||||   || |||| ||||||||||||||    
T  29510531 agatgtttgaattacactccccttccctcttatgttaaaatatacactcccctcccctcttattcaaaacatattaga 29510454  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1141 - 1193
Target Start/End: Complemental strand, 38548963 - 38548910
Alignment:
Q  1141 gtttgacttagaggggtgtta-tttgaggtgagtagtggcgatgggtggttatg 1193  Q
    |||||| |||||||||||||| |||| | ||||||||| |||||||||||||||    
T  38548963 gtttgatttagaggggtgttactttgggatgagtagtgacgatgggtggttatg 38548910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1004 - 1081
Target Start/End: Original strand, 46682696 - 46682773
Alignment:
Q  1004 agatgtttaaattacactaccttatcctcttgtgtcaaaatatacactcccctattcttttatgcaaaacatattaga 1081  Q
    |||||||| ||||||||| |  | ||||||| ||| |||||||||||||||||  ||| |||| ||||| ||||||||    
T  46682696 agatgtttgaattacacttcgctctcctcttatgttaaaatatacactccccttctctcttattcaaaatatattaga 46682773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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