View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1525_2D_low_20 (Length: 229)

Name: NF1525_2D_low_20
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1525_2D_low_20
NF1525_2D_low_20
[»] chr3 (1 HSPs)
chr3 (26-212)||(15761971-15762157)
[»] chr5 (1 HSPs)
chr5 (35-212)||(5672000-5672177)
[»] chr7 (3 HSPs)
chr7 (35-211)||(13331530-13331706)
chr7 (35-211)||(13342445-13342621)
chr7 (104-210)||(33430229-33430336)
[»] chr2 (2 HSPs)
chr2 (20-210)||(26661442-26661632)
chr2 (104-210)||(6049931-6050037)
[»] chr6 (2 HSPs)
chr6 (20-210)||(21481360-21481550)
chr6 (92-209)||(19701165-19701283)
[»] chr8 (2 HSPs)
chr8 (95-209)||(32717823-32717938)
chr8 (95-209)||(10637656-10637771)
[»] scaffold0586 (1 HSPs)
scaffold0586 (92-209)||(9598-9716)
[»] chr1 (2 HSPs)
chr1 (92-209)||(22893808-22893926)
chr1 (104-210)||(44306148-44306253)
[»] chr4 (1 HSPs)
chr4 (104-210)||(13893703-13893809)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 26 - 212
Target Start/End: Complemental strand, 15762157 - 15761971
Alignment:
Q  26 gccattctttttctctgattccctctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatcaactgtttgctaat 125  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  15762157 gccattctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgatctttgtatgttcatcaactatttgctaat 15762058  T
Q  126 ttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttggtgattggt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15762057 ttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattggt 15761971  T

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Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 5672177 - 5672000
Alignment:
Q  35 tttctctgattccctctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatcaactgtttgctaatttgggtttt 134  Q
    |||||||||||||| |||||||||||||| ||| || |||||||||||| | | || ||||||||||| ||||||||||||| ||||| |||  | ||||    
T  5672177 tttctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatcaactgcttgctgattgagttttt 5672078  T
Q  135 gatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttggtgattggt 212  Q
    ||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5672077 gatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattggt 5672000  T

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Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 13331706 - 13331530
Alignment:
Q  35 tttctctgattccctctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatcaactgtttgctaatttgggtttt 134  Q
    |||||||||||||| |||||||||||||| ||| || |||||||||||| | | || ||||||||||| ||||||||||||| ||||| |||  | ||||    
T  13331706 tttctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatcaactgcttgctgattgagttttt 13331607  T
Q  135 gatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttggtgattgg 211  Q
    ||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13331606 gatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattgg 13331530  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 13342621 - 13342445
Alignment:
Q  35 tttctctgattccctctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatcaactgtttgctaatttgggtttt 134  Q
    |||||||||||||| |||||||||||||| ||| || |||||||||||| | | || ||||||||||| ||||||||||||| ||||| |||  | ||||    
T  13342621 tttctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatcaactgcttgctgattgagttttt 13342522  T
Q  135 gatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttggtgattgg 211  Q
    ||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13342521 gatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattgg 13342445  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 33430336 - 33430229
Alignment:
Q  104 tgttcatcaactgtttgctaatttgggttttga-tttcactattcttttcaaagtaccatctaa-tttcatctcaattcttccattactcaacatagatt 201  Q
    |||||||||| ||||||||| ||||| |||||| |||||||||||| ||||| ||||||||||| |||  | | |||  |||||||||||||| ||||||    
T  33430336 tgttcatcaagtgtttgcta-tttggattttgaatttcactattctcttcaaggtaccatctaattttttttttaatcgttccattactcaacgtagatt 33430238  T
Q  202 tggtgattg 210  Q
    || ||||||    
T  33430237 tgatgattg 33430229  T

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Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 26661442 - 26661632
Alignment:
Q  20 attcccgccattctttttctctgattccctctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatcaactgttt 119  Q
    |||||||| |||||||||||||||||||| |||||||||||||| |||  | |||| ||||||||  | || ||||||||||| ||| ||||||||| ||    
T  26661442 attcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatcaactgctt 26661541  T
Q  120 gctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttggtgattg 210  Q
    || |||| || ||||||||||||| |||| ||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26661542 gccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattactcaacatagatttggtgattg 26661632  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 6049931 - 6050037
Alignment:
Q  104 tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttg 203  Q
    ||||||||||||| |||||| ||||| | | ||||||||| |||| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||||    
T  6049931 tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 6050030  T
Q  204 gtgattg 210  Q
    |||||||    
T  6050031 gtgattg 6050037  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 21481360 - 21481550
Alignment:
Q  20 attcccgccattctttttctctgattccctctaaacattttcactcatcttcttctatataaaaaacatcctatgatctttgtatgttcatcaactgttt 119  Q
    ||||| || |||||||||||||||||||| |||||||||||||| |||  | |||| ||||||||  | || ||||||||||| ||| ||||||||  ||    
T  21481360 attcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaacccatgatctttgtgtgtgcatcaactactt 21481459  T
Q  120 gctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttggtgattg 210  Q
    || |||| || ||||||||||||| |||| ||||| ||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  21481460 gccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattactcaacatagatttggtgattg 21481550  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 19701165 - 19701283
Alignment:
Q  92 atgatctttgta-tgttcatcaactgtttgctaatttgggtttt-gatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 189  Q
    |||||||||||| ||||||||||||| ||||| ||||| ||||| ||||||||| |||| ||||| ||||||||||||||||| | ||||||||||||||    
T  19701165 atgatctttgtagtgttcatcaactgcttgct-atttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattac 19701263  T
Q  190 tcaacatagatttggtgatt 209  Q
    |||||||||||||| |||||    
T  19701264 tcaacatagatttgttgatt 19701283  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 32717938 - 32717823
Alignment:
Q  95 atctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactca 192  Q
    ||||||||| ||||||||||||| |||||  |||| |||||| |||||||| |||| ||||| ||||||||||||||||| | |||||||||||||||||    
T  32717938 atctttgtagtgttcatcaactgcttgctg-tttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactca 32717840  T
Q  193 acatagatttggtgatt 209  Q
    |||||||||||||||||    
T  32717839 acatagatttggtgatt 32717823  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 209
Target Start/End: Original strand, 10637656 - 10637771
Alignment:
Q  95 atctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactca 192  Q
    ||||||||| ||||||||||||| |||||  |||| |||||| |||||||| |||| ||||| ||| ||||||||||||| | |||||||||||||||||    
T  10637656 atctttgtagtgttcatcaactgcttgctg-tttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactca 10637754  T
Q  193 acatagatttggtgatt 209  Q
    |||||||||||||||||    
T  10637755 acatagatttggtgatt 10637771  T

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Target: scaffold0586 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 9598 - 9716
Alignment:
Q  92 atgatctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 189  Q
    |||||||||||| ||||||||||||| ||| |  |||| |||||| |||||||| |||| ||||| ||||||||||||||||| | ||||||||||||||    
T  9598 atgatctttgtagtgttcatcaactgcttgttg-tttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattac 9696  T
Q  190 tcaacatagatttggtgatt 209  Q
    ||||||||||||||||||||    
T  9697 tcaacatagatttggtgatt 9716  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 22893808 - 22893926
Alignment:
Q  92 atgatctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 189  Q
    |||||||||||| ||||||||||||| |||||  |||| |||||| |||||||| |||| ||||| ||| ||||||||||||| | ||||||||||||||    
T  22893808 atgatctttgtagtgttcatcaactgcttgctg-tttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattac 22893906  T
Q  190 tcaacatagatttggtgatt 209  Q
    ||||||||||||||||||||    
T  22893907 tcaacatagatttggtgatt 22893926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 44306148 - 44306253
Alignment:
Q  104 tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttg 203  Q
    ||||||||||||| |||||| ||||| | | ||||||||| |||| ||||| |||||||| |||| | | ||||||||||||||||||||||||||||||    
T  44306148 tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttccattactcaacatagatttg 44306246  T
Q  204 gtgattg 210  Q
    || ||||    
T  44306247 gtcattg 44306253  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 13893809 - 13893703
Alignment:
Q  104 tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttg 203  Q
    ||||||||||||| ||| || ||||| | | ||||||||| |||| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||||    
T  13893809 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 13893710  T
Q  204 gtgattg 210  Q
    |||||||    
T  13893709 gtgattg 13893703  T

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