View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1525_2D_low_21 (Length: 211)

Name: NF1525_2D_low_21
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1525_2D_low_21
NF1525_2D_low_21
[»] chr6 (3 HSPs)
chr6 (19-107)||(32933443-32933530)
chr6 (138-203)||(19700883-19700948)
chr6 (138-211)||(21481134-21481207)
[»] chr3 (1 HSPs)
chr3 (142-211)||(15762326-15762395)
[»] chr8 (2 HSPs)
chr8 (138-211)||(32718177-32718250)
chr8 (138-203)||(10637344-10637409)
[»] chr7 (2 HSPs)
chr7 (138-211)||(13331883-13331956)
chr7 (138-204)||(13342805-13342871)
[»] chr2 (2 HSPs)
chr2 (138-211)||(26661216-26661289)
chr2 (138-211)||(6049617-6049690)
[»] scaffold0586 (1 HSPs)
scaffold0586 (143-203)||(9319-9379)
[»] chr5 (1 HSPs)
chr5 (138-204)||(5672361-5672427)
[»] chr1 (2 HSPs)
chr1 (138-203)||(22893500-22893565)
chr1 (138-207)||(44305834-44305903)
[»] scaffold0500 (1 HSPs)
scaffold0500 (138-183)||(362-407)
[»] chr4 (1 HSPs)
chr4 (138-211)||(13894026-13894099)


Alignment Details
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 32933530 - 32933443
Alignment:
Q  19 cagggatgactcaaaaagagtttatggtccagccttctcgagactaaaaaggtcaagacactagacgactaacactgcttgaatactta 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  32933530 cagggatgactcaaaaagagtttatggtccagccttctcaagact-aaaaggtcaagacactagacgactaatactgcgtgaatactta 32933443  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 19700883 - 19700948
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatg 203  Q
    |||| |||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||    
T  19700883 ttccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 19700948  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 21481134 - 21481207
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 211  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||| |||| |  |||||||||| || |||||    
T  21481134 ttcctaggaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaa 21481207  T

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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 15762395 - 15762326
Alignment:
Q  142 caggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 211  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762395 caggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 15762326  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 32718250 - 32718177
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 211  Q
    |||| |||||||||||| ||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||    
T  32718250 ttccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtctaggaa 32718177  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 10637344 - 10637409
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatg 203  Q
    |||| |||||||||||| ||||||| || |||||||||||||||| ||||| ||||||||||||||    
T  10637344 ttccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 10637409  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 13331956 - 13331883
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 211  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| ||||| |||||    
T  13331956 ttcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaa 13331883  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 13342871 - 13342805
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgc 204  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| ||||    
T  13342871 ttcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgc 13342805  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 26661216 - 26661289
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 211  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||| |||| |  ||||||||||||| |||||    
T  26661216 ttcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaa 26661289  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 6049617 - 6049690
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 211  Q
    |||| |||||||||||||||||||| || ||| || |||||||||| |||| |  ||| |||||||||||||||    
T  6049617 ttcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaa 6049690  T

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Target: scaffold0586 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 9319 - 9379
Alignment:
Q  143 aggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatg 203  Q
    |||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||||||    
T  9319 aggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatg 9379  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 5672427 - 5672361
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgc 204  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| ||||    
T  5672427 ttcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgc 5672361  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 22893500 - 22893565
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatg 203  Q
    |||| |||||||||||| ||||||| || |||||||||||||||| ||||| ||||||||||||||    
T  22893500 ttccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 22893565  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 44305834 - 44305903
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgccta 207  Q
    |||| |||||||||||||||||||| || ||| ||||||||||||| |||| |  ||| |||||||||||    
T  44305834 ttcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgccta 44305903  T

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Target: scaffold0500 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 407 - 362
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtag 183  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||    
T  407 ttcctaggaatctaaggctggaattgaatattgctttgtttggtag 362  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 13894099 - 13894026
Alignment:
Q  138 ttcccaggaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaa 211  Q
    |||| |||||||||||||||||||| || ||| ||||||||||||| |||| |  ||| |||||||||||||||    
T  13894099 ttcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaa 13894026  T

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