View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1525_2D_low_24 (Length: 208)

Name: NF1525_2D_low_24
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1525_2D_low_24
NF1525_2D_low_24
[»] chr4 (12 HSPs)
chr4 (67-192)||(39544580-39544705)
chr4 (79-192)||(39525296-39525409)
chr4 (1-74)||(39544496-39544569)
chr4 (4-74)||(39521703-39521773)
chr4 (69-152)||(39521789-39521872)
chr4 (1-74)||(39525200-39525273)
chr4 (1-74)||(39576348-39576421)
chr4 (1-74)||(39511457-39511530)
chr4 (1-74)||(39580877-39580950)
chr4 (131-192)||(39581037-39581098)
chr4 (79-179)||(39511553-39511653)
chr4 (67-134)||(39576432-39576499)
[»] chr7 (2 HSPs)
chr7 (1-69)||(3331511-3331579)
chr7 (87-170)||(3331399-3331482)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 39544580 - 39544705
Alignment:
Q  67 aaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaact 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39544580 aaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaaacactggtgattgacttgttactttggagctttttctgaaact 39544679  T
Q  167 tgttttcgggtaagtagggtttgatt 192  Q
    |||||| |||||||||||||||||||    
T  39544680 tgtttttgggtaagtagggtttgatt 39544705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 39525296 - 39525409
Alignment:
Q  79 aagactcggaatggaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaacttgttttcgggta 178  Q
    |||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||| || |||||||||| |||||||||||||| |||||    
T  39525296 aagattcggaatgaaatatccttgctgtttggtagagaggtgaaggcactgatgattgactggtttctatggagcttttgctgaaacttgttttagggta 39525395  T
Q  179 agtagggtttgatt 192  Q
      | ||||||||||    
T  39525396 gttggggtttgatt 39525409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39544569 - 39544496
Alignment:
Q  1 aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattca 74  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39544569 aaacaacacctacatggtatgtttccatttcttttcattctcttcaccaactaacctttcctctgcaaaattca 39544496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 39521773 - 39521703
Alignment:
Q  4 caacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattca 74  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39521773 caacacttacatggtacgtttccatttcttttcattctcttcaccaactaacctttcctctgcaaaattca 39521703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 39521789 - 39521872
Alignment:
Q  69 aattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggag 152  Q
    |||||||||||||| | |||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39521789 aattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaagacactggtgattgacttgttactttggag 39521872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39525273 - 39525200
Alignment:
Q  1 aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattca 74  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||    
T  39525273 aaacaacacctacatggtacgtttccatttcttttcattctcttcaccacttaacctttccactgcaaaattca 39525200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39576421 - 39576348
Alignment:
Q  1 aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattca 74  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  39576421 aaacaacacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattca 39576348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39511530 - 39511457
Alignment:
Q  1 aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattca 74  Q
    |||||||||||| ||||||||||||| |||| ||||||||||| |||||||||| |||||| ||||||||||||    
T  39511530 aaacaacacctatatggtacgtttccatttcctttcattctctacaccaactaaactttccactgcaaaattca 39511457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 39580950 - 39580877
Alignment:
Q  1 aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattca 74  Q
    ||||||||| |||||||||||||||| |||||||  |||||||| ||||||||| |||||| ||||||||||||    
T  39580950 aaacaacacttacatggtacgtttccatttctttctattctctttaccaactaatctttccactgcaaaattca 39580877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 39581037 - 39581098
Alignment:
Q  131 tgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgatt 192  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||    
T  39581037 tgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgatt 39581098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 39511553 - 39511653
Alignment:
Q  79 aagactcggaatggaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaacttgttttcgggta 178  Q
    |||| |||||| |||| |||||||| ||||||||||||| |||||  |||| ||||||| ||||| || |||||||||| |||||||||||| | |||||    
T  39511553 aagattcggaacggaaaatccttgcagtttggtagagagatgaaggaactgatgattgatttgtttctatggagcttttgctgaaacttgttatagggta 39511652  T
Q  179 a 179  Q
    |    
T  39511653 a 39511653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 39576432 - 39576499
Alignment:
Q  67 aaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaagacactggtgat 134  Q
    ||||||| ||||| || || |||||||| || |||||||||||||| |||||||||||||||| ||||    
T  39576432 aaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaagacactgatgat 39576499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3331511 - 3331579
Alignment:
Q  1 aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaa 69  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |||||||    
T  3331511 aaacaacacctacatggtacgtttccatttcctttcattctcttcaccaattaacctttccactgcaaa 3331579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 3331482 - 3331399
Alignment:
Q  87 gaatggaatatccttgctgtttggtagagaggtgaagacactggtgattgacttgttactttggagctttttctgaaacttgtt 170  Q
    |||||||| || |||||| ||||||| ||||||||||  |||| | ||||| ||||| ||  ||||||||| ||||||||||||    
T  3331482 gaatggaaaattcttgctctttggtaaagaggtgaaggaactgattattgatttgtttctacggagcttttgctgaaacttgtt 3331399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University