View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1525_2D_low_3 (Length: 1001)
Name: NF1525_2D_low_3
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 822; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 822; E-Value: 0
Query Start/End: Original strand, 9 - 983
Target Start/End: Complemental strand, 36776584 - 36775599
Alignment:
| Q |
9 |
ggacatcacttgaagttagatacaacatcaataaagttggaaaataaacatgattatttaaagaaaattgtttgatgcacacccatatgagtttatgttt |
108 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36776584 |
ggacaccatttgaagttagatacaacatcaataaagttggaaaataaacatgattatttaaagaaaattgtttgatgcacacccatatgagtttatgttt |
36776485 |
T |
|
| Q |
109 |
ctcgagggagaaagattagaggagatgatgtgataagttacaattcttatacgaagattttnnnnnnnnn-tcatatagaaagagagataaa-------- |
199 |
Q |
| |
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| T |
36776484 |
ctcgagggagaaagattagagaagatgatgtgataagttacaattattatacgaagatttaaaagaaaaaatcatatagaaagagagataaagagataaa |
36776385 |
T |
|
| Q |
200 |
ataaaatgttatatgaatgtagaagaatatgaagtgttcaaatataatgatcgtaatttaagcatgatgacaagactgtcaaaacgagttatatagatga |
299 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36776384 |
atacaatgttatatgaatgtagaagaatatgaagtgttcaaatataatgatcgtaatttaagcatgatgacaagactgtcaaaacgagttatatagatga |
36776285 |
T |
|
| Q |
300 |
accttaaactataggttagttgtgtaattggcaataccatagacnnnnnnnnnnnnaaaatgatcaataataccatagacataaaagaaatataatacaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36776284 |
accttaaactataggttagttgtgtaattggcaataccatagacttttttgtttt-aaaatgatcaataataccatagacataaaagaaatataatacaa |
36776186 |
T |
|
| Q |
400 |
caataatttacaaatatgataattttctctccctttccattatctttttaaaggagataaaatgacatgacatggatgaataaataaataataaaagagt |
499 |
Q |
| |
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| T |
36776185 |
caataatttacaaatatgataattttctctccctttccattatctttt-aaaggagataaaatgacatgacatggatgaataaataaataataaaagagt |
36776087 |
T |
|
| Q |
500 |
ggtcaagtagcaatgta----gcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatcctta |
595 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36776086 |
ggtcaagtagcaatgtacgtagcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatcctta |
36775987 |
T |
|
| Q |
596 |
tttttctcactcaaaacaaacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttcatgttcctatagacaataaccttgttgctaa |
695 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36775986 |
tttttctcactcaaaacaaacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttcatgttcctatagacaataaccttgttgctaa |
36775887 |
T |
|
| Q |
696 |
tactattttgttgatcattaggaatcaaaggaacaacattgatcaaaggcaatgaccttggcaatgaaccatgctgctcaaagtcatcaacaattttctc |
795 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36775886 |
tactattttgttgatcattaggaatcaaaggaacaacattgatcaaaggcaatgaccttggcaatgaaccatgttgctcaaagtcatcaacaattttctc |
36775787 |
T |
|
| Q |
796 |
ttcttcattagcaaatgtgagtataaggcgaccattttgtcgcttagccaagaagttgttatgtgaaggaaccgacactacttctaggaacaaaaacaat |
895 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36775786 |
ttcttcattagcaaatgtgagtataaggcgaccattttgtcgcttagccaagaagttgttatgtgatggaaccgacactacttctaggaacaaaaacaat |
36775687 |
T |
|
| Q |
896 |
cttccattgtcacgatggggcctcattttgagtggttgactttgactaaagagtaaaggaagtggaggaggaaaacaacgtggtttct |
983 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36775686 |
cttccattgtcacggtggggcctcattttgagtggttgactttgactaaagagtaaaggaagtggaggaggaaaacaacgtggtttct |
36775599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 367 - 673
Target Start/End: Complemental strand, 36789045 - 36788735
Alignment:
| Q |
367 |
taataccatagacataaaagaaatata--atacaacaataatttacaaatatgataattttctctc-cctttccattatctttttaaaggagataaaatg |
463 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||||| |||||| ||||||||||||| |
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|
| T |
36789045 |
taataccatagacataaaagaaatatataatacaacaataatttacaaatatgatattttcctctttcctttccattttctttt--aaggagataaaata |
36788948 |
T |
|
| Q |
464 |
acatgacatggatgaataaataaataataaaa---gagtggtcaagtagcaatgtagcaagggtcccttaaaagaaaagaccttgtagctctagaagctt |
560 |
Q |
| |
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||||||||||||||||||| |||| || |||| ||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| || ||| |
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|
| T |
36788947 |
acatgacatggatgaataattaaaaaaaaaaaaaagagtggtcaggtagcaatgtaacaagggtcccttaacaaaaaagaccttgtagctctataatctt |
36788848 |
T |
|
| Q |
561 |
tgcataacccaaaattgtgaaccaagtaatccttatttttctcactcaaaacaaacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatat |
660 |
Q |
| |
|
|||| |||| |||| ||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
36788847 |
tgcaaaacctcaaatcgtgaaccaacttatccttatttttcccactcaaaacaaacaagtgtggtaaatcttgtgatgcttcatttgaaccttgatatat |
36788748 |
T |
|
| Q |
661 |
gttcatgttccta |
673 |
Q |
| |
|
||||||||||||| |
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|
| T |
36788747 |
gttcatgttccta |
36788735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 772 - 983
Target Start/End: Complemental strand, 36788492 - 36788278
Alignment:
| Q |
772 |
ctcaaagtcatcaacaattttctcttcttcattag---caaatgtgagtataaggcgaccattttgtcgcttagccaagaagttgttatgtgaaggaacc |
868 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||||| |||| ||||| |||||||||||||||||||||||||| ||||| || ||| ||||||||| |
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|
| T |
36788492 |
ctcaaagtcctcatcaatttcttcttcatcattagtagcaaacgtgaggataaggcgaccattttgtcgcttagcgaagaatttattaggtgaaggaatt |
36788393 |
T |
|
| Q |
869 |
gacactacttctaggaacaaaaacaatcttccattgtcacgatggggcctcattttgagtggttgactttgactaaagagtaaaggaagtggaggaggaa |
968 |
Q |
| |
|
||||| |||| |||||||||| |||| |||||||||||||| ||||| |||||| |||||||| || |||||||||||| ||||||||||||||||| |
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|
| T |
36788392 |
gacacaacttgtaggaacaaagacaaccttccattgtcacggcggggcatcatttgaagtggttggctatgactaaagagtgaaggaagtggaggaggat |
36788293 |
T |
|
| Q |
969 |
aacaacgtggtttct |
983 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36788292 |
aacaacgtggtttct |
36788278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 772 - 975
Target Start/End: Complemental strand, 36760493 - 36760290
Alignment:
| Q |
772 |
ctcaaagtcatcaacaattttctcttcttcattagcaaatgtgagtataaggcgaccattttgtcgcttagccaagaagttgttatgtgaaggaaccgac |
871 |
Q |
| |
|
|||||| |||||| |||||| ||||| |||||| ||| | ||| | ||| ||||||||||||||||| | |||||||| |||||||||||||| ||| |
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| T |
36760493 |
ctcaaactcatcatcaatttcttcttcatcattattaaacgagaggacaagacgaccattttgtcgcttggtgaagaagttattatgtgaaggaactgac |
36760394 |
T |
|
| Q |
872 |
actacttctaggaacaaaaacaatcttccattgtcacgatggggcctcattttgagtggttgactttgactaaagagtaaaggaagtggaggaggaaaac |
971 |
Q |
| |
|
|| |||| |||||||||||||| |||||||||||||| ||||| |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
36760393 |
acaacttgtaggaacaaaaacagccttccattgtcacgttggggtgtcatttgaagtggttggctttgactaaaaagtgaaggaagtggaggaggaaaac |
36760294 |
T |
|
| Q |
972 |
aacg |
975 |
Q |
| |
|
|||| |
|
|
| T |
36760293 |
aacg |
36760290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 794 - 909
Target Start/End: Complemental strand, 36796865 - 36796753
Alignment:
| Q |
794 |
tcttcttcattagcaaatgtgagtataaggcgaccattttgtcgcttagccaagaagttgttatgtgaaggaaccgacactacttctaggaacaaaaaca |
893 |
Q |
| |
|
|||||||||| | ||| ||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||| |||| ||||||||||||| |
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|
| T |
36796865 |
tcttcttcatcattaaacgtgaggataaggcgaccattttgtcgcttagcgaagaagtagttgtgtgaaggaacctgcacaacttgtaggaacaaaaac- |
36796767 |
T |
|
| Q |
894 |
atcttccattgtcacg |
909 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36796766 |
--cttccattgtcacg |
36796753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 535 - 718
Target Start/End: Complemental strand, 36760907 - 36760715
Alignment:
| Q |
535 |
aaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatccttatttttctcactcaaaacaaacaagtgttgtaaatctttt |
634 |
Q |
| |
|
|||||||||||||| ||||||| | ||||| ||| ||| | |||||||| ||||||||||| | |||||||||||||| |||||| |||||| | |
|
|
| T |
36760907 |
aaaagaccttgtagttctagaatccttgcaaaacttcaaactatgaaccaaataatccttattcacacctctcaaaacaaacaactgttgtgaatcttgt |
36760808 |
T |
|
| Q |
635 |
gatgcttcatttgaacc---ttgatatatgttcatgttcctatagac------aataaccttgttgctaatactattttgttgatcattagga |
718 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||| | | |||| || ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36760807 |
gatgcttcatttgaagctaattgatttatgttcatgtttccagagacaacgttaacaaccttgttgctaatactattttgttgatcactagga |
36760715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 36789412 - 36789289
Alignment:
| Q |
24 |
ttagatacaacatcaataaagttggaaaataaacatgatt----atttaaagaaaattgtttgatgcacacccatatgagtttatgtttctcgagggaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||| || ||| |||||| || |||||||||||||| ||| ||||||| |||| |
|
|
| T |
36789412 |
ttagatacaacatcaataaagttggaaagaaaacatgattgatagtttataggaaaatgtttggtgtacacccatatgagtgtatacttctcgatagaga |
36789313 |
T |
|
| Q |
120 |
aagattagaggagatgatgtgata |
143 |
Q |
| |
|
|| ||||||| | ||||||||||| |
|
|
| T |
36789312 |
aatattagagaaaatgatgtgata |
36789289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 732 - 768
Target Start/End: Complemental strand, 36797077 - 36797041
Alignment:
| Q |
732 |
cattgatcaaaggcaatgaccttggcaatgaaccatg |
768 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36797077 |
cattgatcaaaggcaatgaccgtggcaatgaaccatg |
36797041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 696
Target Start/End: Complemental strand, 36797193 - 36797138
Alignment:
| Q |
641 |
tcatttgaaccttgatatatgttcatgttcctatagacaataaccttgttgctaat |
696 |
Q |
| |
|
||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
36797193 |
tcatttgaaacttgatttatgttcatgttcccagagacacaaaccttgttgctaat |
36797138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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