View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1525_2D_low_5 (Length: 618)
Name: NF1525_2D_low_5
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_low_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr1 (16 HSPs) |
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|
Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 19666283 - 19665666
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
19666283 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagcgcttccatcgacgaattccaaccacaatg |
19666184 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19666183 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggactccaattcaccacttttcctctctcatttgtttcctctaagaactcattt |
19666084 |
T |
|
| Q |
201 |
ggtagaacatgttcctttcgacccgattccttagaaggtggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19666083 |
ggtagaacatgttcctttcgacccgattccttagaaggtggttttagtacccacaaaaatgaaacattagaatccaataacccatgtgcaatttcattca |
19665984 |
T |
|
| Q |
301 |
cttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatcact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19665983 |
cttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatcact |
19665884 |
T |
|
| Q |
401 |
cttaacaaaatcaccgcgaatattactcgcacatttaatctttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaagatag |
500 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19665883 |
cttaacaaaatcaccgcgaatatcactcgcacatttaatctttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaatatag |
19665784 |
T |
|
| Q |
501 |
tcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccctagaaatg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19665783 |
tcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccctagaaatg |
19665684 |
T |
|
| Q |
601 |
aatatttactaaaaggat |
618 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19665683 |
aatatttactaaaaggat |
19665666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 11546639 - 11547256
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||| |||||||| |
|
|
| T |
11546639 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaacacctaaactaagtgcctctattgaagaattccaaccacaatg |
11546738 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccattt |
200 |
Q |
| |
|
||||||||||||| | | |||||||||||| | ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11546739 |
tgttatgaaacataccaatgaaggatgagccaatacttcttcttgtggactccatttcacaacttttcctctctcatttgtttcctctaagaacccattt |
11546838 |
T |
|
| Q |
201 |
ggtagaacatgttcctttcgacccgattccttagaaggtggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattca |
300 |
Q |
| |
|
|| | ||||||||| ||| | || |||||||| ||||||||||||||||||||||||||| || | |||||| |||||||||||||| |||||||||| |
|
|
| T |
11546839 |
ggcaaaacatgttcttttagccctacttccttaggaggtggttttagtacccacaaaaatgatacttgagaatctaataacccatatgctatttcattca |
11546938 |
T |
|
| Q |
301 |
cttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatcact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11546939 |
cttgttcttgtggaaggtacacaatagtcccaaaagaaatataaaccacagaatcttttggctttgtgtttagccactctataatattacaatcatcact |
11547038 |
T |
|
| Q |
401 |
cttaacaaaatcaccgcgaatattactcgcacatttaatctttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaagatag |
500 |
Q |
| |
|
|||||||||||| || ||||||||||| |||| |||||| |||||||| |||||||||||||| || || ||| | |||| |||||||| | || |||| |
|
|
| T |
11547039 |
cttaacaaaatctccacgaatattacttgcacctttaatatttggatttttaaacaatggaccaataggtcttatgtggatggatttttttgtaatatag |
11547138 |
T |
|
| Q |
501 |
tcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccctagaaatg |
600 |
Q |
| |
|
|| ||| ||||||| |||||||| ||||| | || || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11547139 |
tcaatgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatg |
11547238 |
T |
|
| Q |
601 |
aatatttactaaaaggat |
618 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
11547239 |
gatatggactaaaaggat |
11547256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 48618927 - 48618310
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||| |||||||| |
|
|
| T |
48618927 |
ccaagaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcccaaagaaagtgcttccattgatgaattccaaccacaatg |
48618828 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccattt |
200 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || || ||||||||||||||| | |
|
|
| T |
48618827 |
tgttatgaagcatgccactgaaggatgagcaagtacttcttcttgtggactccagttcaccacttttcctctctcacttattccctctaagaacccatct |
48618728 |
T |
|
| Q |
201 |
ggtagaacatgttcctttcgacccgattccttagaaggtggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattca |
300 |
Q |
| |
|
|| | | |||||| ||| | || |||||| ||||||||||||| |||||||||||| || || | |||||||||||||||||||||||||||||||| |
|
|
| T |
48618727 |
ggcaaattatgttcttttagccctaattcctccgaaggtggttttaatacccacaaaaacgatacttgagaatccaataacccatatgcaatttcattca |
48618628 |
T |
|
| Q |
301 |
cttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatcact |
400 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| |||||| | |||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
48618627 |
cttgttcttgtggaatgtacacaatagacccaaaagaaatataaaccacagaaccttttggctttgtgcttagccactctataatattacaatcatcact |
48618528 |
T |
|
| Q |
401 |
cttaacaaaatcaccgcgaatattactcgcacatttaatctttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaagatag |
500 |
Q |
| |
|
|||||||||||| || |||||||| | |||| |||||| |||||||| | |||||||||||| || || ||| | |||| |||||| |||| |||| |
|
|
| T |
48618527 |
cttaacaaaatctccacgaatattttttgcacctttaatatttggattgtgaaacaatggaccaatgggtcttacgaaaattgttttttttgaaatatag |
48618428 |
T |
|
| Q |
501 |
tcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccctagaaatg |
600 |
Q |
| |
|
|| ||| |||||||||||||||| ||||| | || || || |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48618427 |
tcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagacaaattcttaaactgttctaagatgagtgtccctagaaatg |
48618328 |
T |
|
| Q |
601 |
aatatttactaaaaggat |
618 |
Q |
| |
|
| ||| ||||||||||| |
|
|
| T |
48618327 |
gaaattgactaaaaggat |
48618310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 592
Target Start/End: Original strand, 48652536 - 48653119
Alignment:
| Q |
9 |
tttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatgtgttatga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||| |||||||||||||||| |
|
|
| T |
48652536 |
tttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcccaaagaaagtgcttccattgatgaattccaaccacaatgtgttatga |
48652635 |
T |
|
| Q |
109 |
aacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccatttggtagaac |
208 |
Q |
| |
|
| ||||| |||||||||||||||||||||| ||||||||||| ||| || || ||||||||||||||| ||||||||||||||||||||| ||| | | |
|
|
| T |
48652636 |
agcatgccactgaaggatgagcaagtacttgttcttgtggactccattttacaacttttcctctctcacttgtttcctctaagaacccatctggcaaact |
48652735 |
T |
|
| Q |
209 |
atgttcctttcgacccgattccttagaaggtggttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttct |
308 |
Q |
| |
|
|||| || | | || | ||||||| ||||||||||| |||||||||||| || || | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48652736 |
atgtggctctagcccagcttccttaacaggtggttttaatacccacaaaaacgatacttgagaatccaataacccatatgctatttcattcacttgttct |
48652835 |
T |
|
| Q |
309 |
tgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatcactcttaacaa |
408 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48652836 |
tgaggaaggtacacaacagtaccaaaagaaatataaaccacagaaccttttgtctttgagtttagccactctataatattacaatcatcactcttaacaa |
48652935 |
T |
|
| Q |
409 |
aatcaccgcgaatattactcgcacatttaatctttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaagatagtcgatgta |
508 |
Q |
| |
|
||||||| || ||||| | |||| |||||| |||| || |||||||||||||| || || ||| | ||||||||||| || |||| |||||| ||| | |
|
|
| T |
48652936 |
aatcaccacggatattgtttgcacctttaatgtttgagttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaa |
48653035 |
T |
|
| Q |
509 |
atcatgctctagttcatcataactatcgaccaatacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccc |
592 |
Q |
| |
|
||||||||||||||| ||||| | || || || |||||||| ||||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
48653036 |
atcatgctctagttcttcataggtttctactaaaacacaaaatactttagataaattcttaatttgttctaagacgagtgtccc |
48653119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 269 - 598
Target Start/End: Original strand, 48656244 - 48656573
Alignment:
| Q |
269 |
agaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaacagaatcatttgcctttgag |
368 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| | ||||| | ||||||||| ||||| |||| |||||| |||||| | |||| ||||||| |
|
|
| T |
48656244 |
agaattcaataacccatatgcaatttcattcacttgttctggaggaagttgcacaatagtcccaaaggaaacataaaccacagaaccttttggctttgag |
48656343 |
T |
|
| Q |
369 |
tttagccactctataatattacaatcatcactcttaacaaaatcaccgcgaatattactcgcacatttaatctttggattattaaacaatggaccgattg |
468 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||||||||||| ||||||||||| |||| | | || ||||| || || |||| ||||| |||| |
|
|
| T |
48656344 |
tttagccactctataatagtagaatcatcagtcttaacaaaatcacgacgaatattacttgcacctattatgtttgggttgttgaacaccggaccaattg |
48656443 |
T |
|
| Q |
469 |
gccttgtaaggattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttagataaattctt |
568 |
Q |
| |
|
| ||| | | |||||| |||| ||||| ||| ||||| ||||| |||||||||| ||||| |||| || |||||||| || ||||||| |||||||| |
|
|
| T |
48656444 |
gtcttatgatgattgacttttccgaaatataatcgataaaatcaggctctagttcttcataggtatccacaaatacacacaatgctttagacaaattctt |
48656543 |
T |
|
| Q |
569 |
aaactgttctaaaatgagtgtccctagaaa |
598 |
Q |
| |
|
|| ||| |||||||||||| |||||||| |
|
|
| T |
48656544 |
aatttgtcctaaaatgagtgggcctagaaa |
48656573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 48660978 - 48661175
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||| |||||||| ||||| | ||| ||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||| |
|
|
| T |
48660978 |
ccaagaactttgcgtttgtaagttggtcaccaaatgcaggaaatgtcaacattggaactcctaaagtaattgcttccatcgatgaattccaaccacaatg |
48661077 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
198 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| ||||| |||||||||||| || |||||||||| ||||| |||| |
|
|
| T |
48661078 |
ggttatgaaacatgccactgaagaatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctccaagaagccat |
48661175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 48666570 - 48666767
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||| |||||||| ||||| | ||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||| || || ||||| |||||||| |
|
|
| T |
48666570 |
ccaagaactttgcgtttgtaagttggtcaccaaatgttggaaatgtcaacattggaactcctaaagtaagtgcttccattgatgagttccaaccacaatg |
48666669 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
198 |
Q |
| |
|
||||||||||||||| ||||| |||||||| | ||||| ||||||||||| ||||||||| |||||||||||| || |||||||||| ||||| |||| |
|
|
| T |
48666670 |
tgttatgaaacatgccactgatggatgagccaatacttgttcttgtggactccaattcactacttttcctctcccacttgtttcctccaagaatccat |
48666767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 48628334 - 48628530
Alignment:
| Q |
2 |
caaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatgt |
101 |
Q |
| |
|
|||||||||||||||||| | || ||||| |||||||||||| ||||| |||||||||| || || ||||||||||| |||||||| ||||||||| |
|
|
| T |
48628334 |
caaaaactttgcatttgtaaggtggtcaccaaatgctggaaatgccaacactggaactcctgaagcaattgcttccatcgttgaattccagccacaatgt |
48628433 |
T |
|
| Q |
102 |
gttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
198 |
Q |
| |
|
|| | ||||||||| || ||||||||| |||||||||| |||||||||| ||| |||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
48628434 |
gtcacgaaacatgccaccgaaggatgatcaagtacttcctcttgtggactccacttcaccacttttcctcactcacttgtttcctccaagaacccat |
48628530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 48584761 - 48584939
Alignment:
| Q |
9 |
tttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatgtgttatga |
108 |
Q |
| |
|
||||||||||| | ||| ||||| | || |||||||||||||| |||||||||||| ||| ||||| || || |||||||| |||||||||||||||| |
|
|
| T |
48584761 |
tttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaagaaagagcttcaattgatgaattccaaccacaatgtgttatga |
48584860 |
T |
|
| Q |
109 |
aacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctc |
187 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||||||| ||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
48584861 |
aacatgcaactgaaggatgagcaagtacatctacttgtggactccactccaccactttccctctctcatttgtttcctc |
48584939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 250 - 398
Target Start/End: Original strand, 48666795 - 48666943
Alignment:
| Q |
250 |
cccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaatataaacaac |
349 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||| ||||||| |||| ||||||| ||||| ||||||| ||||||||||||||||||||| || |
|
|
| T |
48666795 |
cccacaaaaatgtgacttgagaatccaataacccatatgctatttcatacactagttcttgaggaagatacacaacagtaccaaaagaaatataaaccac |
48666894 |
T |
|
| Q |
350 |
agaatcatttgcctttgagtttagccactctataatattacaatcatca |
398 |
Q |
| |
|
|||| | |||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48666895 |
agaaccttttggctttgtgtttagccactctataatattacaatcatca |
48666943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 48656000 - 48656186
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||| |||||||||||||| ||| ||||| || |||||||||| |||| |||||||||| || ||||| ||| |||| |||||||| |||||||| |
|
|
| T |
48656000 |
ccaagaactttgcatttgtaggttggtcaccaaatactggaaatgttaacactggaactcctgaagcaagtgattcaatcgttgaattccaaccacaatg |
48656099 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctc |
187 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||| || |||||||||| |
|
|
| T |
48656100 |
ggttatgaaacatgccactgaaggatgagcaagtacttgttcttgtggactccatttcactacttttcctctcccacttgtttcctc |
48656186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 241 - 398
Target Start/End: Original strand, 48661191 - 48661348
Alignment:
| Q |
241 |
gttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaat |
340 |
Q |
| |
|
|||||| |||||||||||| || || | ||||| ||||||||||||||||||||| || ||||||||||| | | | | ||||||||| ||||||||||| |
|
|
| T |
48661191 |
gttttaatacccacaaaaacgagacttgagaattcaataacccatatgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaat |
48661290 |
T |
|
| Q |
341 |
ataaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatca |
398 |
Q |
| |
|
|||||| |||||| | |||| ||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
48661291 |
ataaactacagaaccttttggctttgtgtttagccactctataatagtagaatcatca |
48661348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 479 - 600
Target Start/End: Original strand, 48639783 - 48639904
Alignment:
| Q |
479 |
gattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttagataaattcttaaactgttct |
578 |
Q |
| |
|
|||||||||||| |||| ||| || ||| |||||||||||||||| ||||| |||| || |||||||||||||||||||| || | |||||||| |||| |
|
|
| T |
48639783 |
gattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatccactaatacacaaaacactttagacaagtccttaaactcttct |
48639882 |
T |
|
| Q |
579 |
aaaatgagtgtccctagaaatg |
600 |
Q |
| |
|
|| |||||| | |||||||||| |
|
|
| T |
48639883 |
aagatgagtttacctagaaatg |
48639904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 478 - 580
Target Start/End: Original strand, 48585209 - 48585311
Alignment:
| Q |
478 |
ggattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttagataaattcttaaactgttc |
577 |
Q |
| |
|
|||||||||||||||||| ||| || ||| | |||||||||||||| ||||| |||| || ||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
48585209 |
ggattgattttttcgaaatataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagataagtccttaaactcttc |
48585308 |
T |
|
| Q |
578 |
taa |
580 |
Q |
| |
|
||| |
|
|
| T |
48585309 |
taa |
48585311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 342 - 550
Target Start/End: Original strand, 48628612 - 48628823
Alignment:
| Q |
342 |
taaacaacagaatcatttgcctttgagtttagccactctataatattacaatcatca---ctcttaacaaaatcaccgcgaatattactcgcacatttaa |
438 |
Q |
| |
|
|||||||||||| | ||| ||||| || |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || || ||| | |
|
|
| T |
48628612 |
taaacaacagaacctgttggctttgtgtgtagccactctataatactacaatcatcatcgctcttaacaaaatcacctcgaatattgcttgctgctttta |
48628711 |
T |
|
| Q |
439 |
tctttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgac |
538 |
Q |
| |
|
| |||| || || |||| ||||| || || || | |||| ||||||||| |||||||| |||||| |||||||||||||||| ||||| |||| | |
|
|
| T |
48628712 |
ttgttgggttcttgaacagaggaccaatgggtctaatgaggactgattttttggaaagataatcgatgaaatcatgctctagttcttcataggtatccgc |
48628811 |
T |
|
| Q |
539 |
caatacacaaaa |
550 |
Q |
| |
|
||||||||||| |
|
|
| T |
48628812 |
taatacacaaaa |
48628823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 48661435 - 48661515
Alignment:
| Q |
479 |
gattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttaga |
559 |
Q |
| |
|
|||||||||||| |||| ||| |||||| |||||||||||| ||| ||| | |||| || |||||||||||||||||||| |
|
|
| T |
48661435 |
gattgatttttttgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaaacactttaga |
48661515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 559
Target Start/End: Original strand, 48667030 - 48667110
Alignment:
| Q |
479 |
gattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgaccaatacacaaaacactttaga |
559 |
Q |
| |
|
||||||||||| ||||| ||| |||||| |||||||||||| ||| ||| | |||| || |||||||||||||||||||| |
|
|
| T |
48667030 |
gattgatttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaaacactttaga |
48667110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 27223372 - 27223566
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||| ||||| |||||||| |
|
|
| T |
27223372 |
ccaaaaactttgcatttgtgacttgatcgccccatgctggaaatgttaacatcggcactcctaaagtaagtgcttccatcgacgagttccaaccacaatg |
27223471 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacc |
195 |
Q |
| |
|
||||| || ||||| || ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| || | |||||||| ||||||| |
|
|
| T |
27223472 |
tgttacaaagcatgccaccgaaggatgagctagtacttgttcttgtggacaccacttcaccacttttcctctcccactagtttcctcgaagaacc |
27223566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 27227563 - 27227760
Alignment:
| Q |
1 |
ccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaactaagtgcttccatcgacgaattccacccacaatg |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||| ||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
27227563 |
ccaagaactttgcatttgtaacttgatcaccccatgctggaaatgttaacatcggcactcctaaagtaagtgcctccatcgacgagttccaaccacaatg |
27227662 |
T |
|
| Q |
101 |
tgttatgaaacatgctactgaaggatgagcaagtacttcttcttgtggacaccaattcaccacttttcctctctcatttgtttcctctaagaacccat |
198 |
Q |
| |
|
||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||| | ||||||||| || || | |||||||| |||||||||| |
|
|
| T |
27227663 |
tgtcatgaaacatgccactgaaggatgagctagtacttgttcttgtggacaccacttcgcaacttttcctttcccactagtttcctccaagaacccat |
27227760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 242 - 614
Target Start/End: Original strand, 27227816 - 27228188
Alignment:
| Q |
242 |
ttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaata |
341 |
Q |
| |
|
|||||||| ||||||||| || || | |||||||||||| ||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| || || |
|
|
| T |
27227816 |
ttttagtatccacaaaaaggagacttgagaatccaataatccataggcaatttcattcacttgttcttgaggaaggtgcacaatagtcccaaatgagatg |
27227915 |
T |
|
| Q |
342 |
taaacaacagaatcatt-tgcctttgagtttagccactctataatattacaatcatcactcttaacaaaatcaccgcgaatattactcgcacatttaatc |
440 |
Q |
| |
|
|| || |||| || ||| || | ||||||||| ||||||||||||| | ||||||||||||||| |||||||| | |||||||| ||| ||| | |
|
|
| T |
27227916 |
tataccacag-atgattgtggccttgagtttaaccactctataatacaatcatcatcactcttaactaaatcaccacagatattacttgcagtttttgtt |
27228014 |
T |
|
| Q |
441 |
tttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgacca |
540 |
Q |
| |
|
||||| || | ||| || ||||| || || ||| | | || || | ||| |||| ||| | ||| ||||||| || | ||| ||||| |||| |||| |
|
|
| T |
27228015 |
tttgggttttgaaataaaggaccaatgggtcttattaagacagaatattttgaaatataatttatgaaatcatgttccaattcctcataggtatccacca |
27228114 |
T |
|
| Q |
541 |
atacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccctagaaatgaatatttactaaaa |
614 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||| || | ||||| ||| ||||||| ||| ||||||||| |
|
|
| T |
27228115 |
atacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaa |
27228188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 242 - 614
Target Start/End: Original strand, 27223625 - 27223997
Alignment:
| Q |
242 |
ttttagtacccacaaaaatgaaacattagaatccaataacccatatgcaatttcattcacttgttcttgtggaaggtacacaatagtaccaaaagaaata |
341 |
Q |
| |
|
||||||||||||||||||||| || | || | || ||| ||||| |||||||||| | |||||||| ||||||| ||||| ||| ||||| || || |
|
|
| T |
27223625 |
ttttagtacccacaaaaatgagacttgtgagttcattaagccataaccaatttcattgatctgttcttgaggaaggtgcacaacagtcccaaaggagatg |
27223724 |
T |
|
| Q |
342 |
taaacaacagaatcatt-tgcctttgagtttagccactctataatattacaatcatcactcttaacaaaatcaccgcgaatattactcgcacatttaatc |
440 |
Q |
| |
|
||||| ||||| | || || ||||||||| | ||||||||| ||| |||||||||||||||||||||||| | |||||||| ||| |||||| |
|
|
| T |
27223725 |
taaaccacaga-tgatggtggctttgagttcaaccactctatgatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatt |
27223823 |
T |
|
| Q |
441 |
tttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaaagatagtcgatgtaatcatgctctagttcatcataactatcgacca |
540 |
Q |
| |
|
| ||| || |||||||| ||||| || || ||| | || ||| ||||| |||| |||||||||| ||||||| |||||||| ||||| |||| |||| |
|
|
| T |
27223824 |
tgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaacca |
27223923 |
T |
|
| Q |
541 |
atacacaaaacactttagataaattcttaaactgttctaaaatgagtgtccctagaaatgaatatttactaaaa |
614 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||||| | |||| |||||| |||| |||| || |||||||| |
|
|
| T |
27223924 |
atacacaaaacactttagacaagttcttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaa |
27223997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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