View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1525_2D_low_6 (Length: 578)
Name: NF1525_2D_low_6
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-172; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 39544569 - 39544231
Alignment:
| Q |
1 |
aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctg |
100 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39544569 |
aaacaacacctacatggtatgtttccatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctg |
39544470 |
T |
|
| Q |
101 |
ttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39544469 |
ttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctc |
39544370 |
T |
|
| Q |
201 |
aaacatcttcatttgcgtttgttaatgcatttgaactctttatgctccctcttcatttaatacccaattcaatggctcgtttcaattacattgattctgc |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39544369 |
aaacatcttcatttgcgttttttaatgcatttgaactctttattctccctcttcatttaatacccaattcaatagctcgtttcaattacattgattctgc |
39544270 |
T |
|
| Q |
301 |
cggtcgaaacttaactacttatagtaatgatttcttctc |
339 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39544269 |
cattcgaaacttaactacttatagtaatgatttcctctc |
39544231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 39521773 - 39521452
Alignment:
| Q |
4 |
caacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctgtta |
103 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
39521773 |
caacacttacatggtacgtttccatttcttttcattctcttcaccaactaacctttcctctgcaaaattcaccgtttcagttcctggtttccttctgtta |
39521674 |
T |
|
| Q |
104 |
caaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaa |
203 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39521673 |
cataatttcaacgctgaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaa |
39521574 |
T |
|
| Q |
204 |
catcttcatttgcgtttgttaatgcatttgaactctttatgctccctcttcatttaatacccaattcaatggctcgtttcaattacattgattctgccgg |
303 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| | || |||||||||||||| | |||| | || |
|
|
| T |
39521573 |
catcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctactgg |
39521474 |
T |
|
| Q |
304 |
tcgaaacttaactacttatagt |
325 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
39521473 |
tcggggcttaactacttatagt |
39521452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 338 - 562
Target Start/End: Complemental strand, 39543062 - 39542838
Alignment:
| Q |
338 |
tcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccactaatatattgcttgacgagaatcttgtagctaaagttgctgat |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39543062 |
tcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccactaatatattgcttgatgagaatcttgtagctaaagttgctgat |
39542963 |
T |
|
| Q |
438 |
tttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaaagggacttttgggtatcttgatcctgattactttagatcac |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39542962 |
tttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaaagggacttttgggtatcttgatcctgattactttagagcac |
39542863 |
T |
|
| Q |
538 |
aacagcttacataaaaatctgatgt |
562 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
39542862 |
aacagcttacagaaaaatctgatgt |
39542838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 338 - 562
Target Start/End: Complemental strand, 39574897 - 39574673
Alignment:
| Q |
338 |
tcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccactaatatattgcttgacgagaatcttgtagctaaagttgctgat |
437 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574897 |
tcattaccttcacaaaggagtagccggtggaataatccaccgtgatgtgaaatccactaatatattgcttgacgagaatcttgtagctaaagttgctgat |
39574798 |
T |
|
| Q |
438 |
tttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaaagggacttttgggtatcttgatcctgattactttagatcac |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39574797 |
tttggtctttcaaggacaggtcctcttgatcaacattcttatgtcagcacatgtgttaaagggacttttgggtatcttgatccggattactttagatcac |
39574698 |
T |
|
| Q |
538 |
aacagcttacataaaaatctgatgt |
562 |
Q |
| |
|
||||||||||| ||||||| ||||| |
|
|
| T |
39574697 |
aacagcttacagaaaaatccgatgt |
39574673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 39525273 - 39524935
Alignment:
| Q |
1 |
aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39525273 |
aaacaacacctacatggtacgtttccatttcttttcattctcttcaccacttaacctttccactgcaaaattcaccgtttcagtccctggtttcattctg |
39525174 |
T |
|
| Q |
101 |
ttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctc |
200 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
39525173 |
ttacaaaatttcgatgcaaaaaacaccaccaactctcctttagtaaaagagtattaccttaaaatcatcagaaaaaaattcaaaatcacgttcacacctc |
39525074 |
T |
|
| Q |
201 |
aaacatcttcatttgcgtttgttaatgcatttgaactctttatgctccctcttcatttaatacccaattcaatggctcgtttcaattacattgattctgc |
300 |
Q |
| |
|
||| | | |||||||| |||| ||||||| | |||||||||||||||||| |||||||||| ||| | ||||| || | |||| |||||| || ||| | |
|
|
| T |
39525073 |
aaaaagcatcatttgcctttgctaatgcaatagaactctttatgctccctgttcatttaatccccgactcaatcgcgcttttccattacaaagagtctac |
39524974 |
T |
|
| Q |
301 |
cggtcgaaacttaactacttatagtaatgatttcttctc |
339 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
39524973 |
tggcagaaacttatctacttatagtaatgatttcctctc |
39524935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 39576421 - 39576148
Alignment:
| Q |
1 |
aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctg |
100 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| || ||||||||| ||||| |
|
|
| T |
39576421 |
aaacaacacttatatggtacgtttccgtttcttttcattctcttcaccaactaaactttccactgcaaaattcaacatttccgttcctggtttccttctg |
39576322 |
T |
|
| Q |
101 |
ttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctc |
200 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
39576321 |
ttacataatttcaacgctgaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctc |
39576222 |
T |
|
| Q |
201 |
aaacatcttcatttgcgtttgttaatgcatttgaactctttatgctccctcttcatttaatacccaattcaatg |
274 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||||||||||| || |||||||||| || |||||||| |
|
|
| T |
39576221 |
aaacatcatcatttgcgtttgttaatgcaatagaactctttatgcttccggttcatttaatccctgattcaatg |
39576148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 338 - 562
Target Start/End: Complemental strand, 39579430 - 39579206
Alignment:
| Q |
338 |
tcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccactaatatattgcttgacgagaatcttgtagctaaagttgctgat |
437 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
39579430 |
tcattaccttcacaaaggagttgctggtggaataatccaccgtgatgtgaaatccactaatatattgcttgatgagaatcttgttgctaaagttgctgat |
39579331 |
T |
|
| Q |
438 |
tttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaaagggacttttgggtatcttgatcctgattactttagatcac |
537 |
Q |
| |
|
||||| ||||||| | |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39579330 |
tttggcctttcaaaggcaggtcctcttgatcaacattcttatgtgagcacaggtgttaaagggacttttgggtatcttgatcctgattactttagatcac |
39579231 |
T |
|
| Q |
538 |
aacagcttacataaaaatctgatgt |
562 |
Q |
| |
|
||| |||||| ||||||| ||||| |
|
|
| T |
39579230 |
tacaccttacagaaaaatccgatgt |
39579206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 39511530 - 39511270
Alignment:
| Q |
1 |
aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||||||||| |||||||||| |||||| |||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
39511530 |
aaacaacacctatatggtacgtttccatttcctttcattctctacaccaactaaactttccactgcaaaattcactgtttcagttcctggtttcattctg |
39511431 |
T |
|
| Q |
101 |
ttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39511430 |
ttacaaaatttcaacgctgaaaacaccaccaactctcctttagtaaaagaatactacgttcaaatcatcagaaaaagattcaaaatcactttcacacctc |
39511331 |
T |
|
| Q |
201 |
aaacatcttcatttgcgtttgttaatgcatttgaactctttatgctccctcttcatttaat |
261 |
Q |
| |
|
||| ||| ||| | || |||||||| ||| | ||||||||| ||||||| |||||||||| |
|
|
| T |
39511330 |
aaaaatcatcactcgcatttgttaacgcaatagaactctttgtgctccccgttcatttaat |
39511270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 338 - 562
Target Start/End: Complemental strand, 39509997 - 39509773
Alignment:
| Q |
338 |
tcattaccttcacaaaggagtagctggtggaataattcaccgtgacgtgaaatccactaatatattgcttgacgagaatcttgtagctaaagttgctgat |
437 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
39509997 |
tcattaccttcacaaaggagcagctggtggaatcattcaccgcgatgtgaagtccactaacatattgcttgatgagcatcttgtagctaaagttgctgat |
39509898 |
T |
|
| Q |
438 |
tttggtctttcaaggacaggtcctcttgatgaacattcttatgtcagcacacgtgttaaagggacttttgggtatcttgatcctgattactttagatcac |
537 |
Q |
| |
|
|||||||||||||| || |||||||||||| | |||||||||||||||||| ||||||| || ||||| || ||||| |||||||| ||||||||||||| |
|
|
| T |
39509897 |
tttggtctttcaagaactggtcctcttgatcagcattcttatgtcagcacaggtgttaagggaactttcggttatctcgatcctgagtactttagatcac |
39509798 |
T |
|
| Q |
538 |
aacagcttacataaaaatctgatgt |
562 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
39509797 |
aacagcttacagaaaaatctgatgt |
39509773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 39580950 - 39580713
Alignment:
| Q |
1 |
aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctg |
100 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||| |||||||| ||||||||| |||||| ||||||||||||| ||||| | || |||||| |||| |
|
|
| T |
39580950 |
aaacaacacttacatggtacgtttccatttctttctattctctttaccaactaatctttccactgcaaaattcaacgtttcctttccaggtttctctctg |
39580851 |
T |
|
| Q |
101 |
ttacaaaatttcaactctgaaaacaccaccaactcttcttt-agtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacct |
199 |
Q |
| |
|
||||||||||| ||| | | |||| |||| | | ||||| |||| | ||||||||| | | |||||||||| |||||||||||||||| |
|
|
| T |
39580850 |
ttacaaaattt------tgatataa------actccgctttcaattaaagaatatttctttaaaatcacccgtaaaagattcaaaatcactttcacacct |
39580763 |
T |
|
| Q |
200 |
caaacatcttcatttgcgtttgttaatgcatttgaactctttatgctccc |
249 |
Q |
| |
|
||||| || ||||||||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
39580762 |
caaacctcatcatttgcgtttgttaatgcaatggaactctttatactccc |
39580713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 3331511 - 3331696
Alignment:
| Q |
1 |
aaacaacacctacatggtacgtttccgtttcttttcattctcttcaccaactaacctttcctctgcaaaattcaatgtttcagtccctggtttcattctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||| ||||| |||| || | |||||| ||||| |
|
|
| T |
3331511 |
aaacaacacctacatggtacgtttccatttcctttcattctcttcaccaattaacctttccactgcaaa-ttcaacatttctgtttccggtttccttctg |
3331609 |
T |
|
| Q |
101 |
ttacaaaatttcaactctgaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatc |
187 |
Q |
| |
|
||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3331610 |
ttaactaatttcgacgctaaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcataaaaagattcacaatc |
3331696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 3331271 - 3331313
Alignment:
| Q |
187 |
cactttcacacctcaaacatcttcatttgcgtttgttaatgca |
229 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
3331271 |
cactttcacacctcaaacatcatcatttgcatttgttaatgca |
3331313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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