View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1525_2D_low_8 (Length: 545)

Name: NF1525_2D_low_8
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1525_2D_low_8
NF1525_2D_low_8
[»] chr6 (5 HSPs)
chr6 (208-545)||(1410676-1411013)
chr6 (1-140)||(1410469-1410608)
chr6 (416-495)||(1419833-1419912)
chr6 (416-497)||(1414284-1414365)
chr6 (418-500)||(1408010-1408092)


Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 208 - 545
Target Start/End: Original strand, 1410676 - 1411013
Alignment:
Q  208 catgatagtgagagtgaagacaaaatcttatcacatgtaaccttaaataatttaacttgtgacaaaattgtcagtgtatacacattagtatacaactttg 307  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1410676 catgataatgagagtgaagacaaaatcttatcacatgtaaccttaaataatttaacttgtgacaaaattgtcagtgtatacacattagtatacaactttg 1410775  T
Q  308 atatttaaagtttctatgaaattaaaatggtcactctacttggctgtggtagaagtctgataataccatttcagattcatacacattgagagaaagcttc 407  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1410776 atatttaaagtttctatgaaattaaaatggtcactctacttgactgtggtagaagtctgataataccatttcagattcatacacattgagagaaagcttc 1410875  T
Q  408 aatatcaatcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggc 507  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1410876 aatctcaatcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggc 1410975  T
Q  508 aatagtaactctagcaaatgtgtgtaccctgcaattta 545  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1410976 aatagtaactctagcaaatgtgtgtaccctgcaattta 1411013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 1410469 - 1410608
Alignment:
Q  1 ttttggaagctgtgtttacccctctcaccccgtgaaaagtaccattccaaatgggaaaaagcataattttttcaccactgcatgaaagtttccatctcgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1410469 ttttggaagctgtgtttacccctctcaccccgtgaaaagtaccattccaaatgggaaaaagcataattttttcaccactgcatgaaagtttccatctcgg 1410568  T
Q  101 ttgatcaatgactaatctccgtcggagacttaaccgtgac 140  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  1410569 ttgatcaatgactaatctctgtcggagacttaacggtgac 1410608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 495
Target Start/End: Original strand, 1419833 - 1419912
Alignment:
Q  416 tcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagt 495  Q
    ||||||||||||||||| |||||||| |||||||||||||||| || |||||| ||||||||||||||||||| ||||||    
T  1419833 tcatgaattctatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagt 1419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 1414284 - 1414365
Alignment:
Q  416 tcatgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga 497  Q
    |||||||||  |||||| |||||||| |||||||||||||||| || |||||| |||||| |||||||||||| ||||||||    
T  1414284 tcatgaatttcatgaggttaattcatgtactttggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga 1414365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 1408010 - 1408092
Alignment:
Q  418 atgaattctatgaggctaattcatatactttggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaa 500  Q
    ||||||||||||||  |||||||| ||||||||| ||||||||| | |||| ||| |||||| |||||||||  |||||||||    
T  1408010 atgaattctatgagattaattcatgtactttggtttttcaatctgtgtgtgacatttacattcattcaagtcctaagtgagaa 1408092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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