View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1525_2D_low_9 (Length: 528)
Name: NF1525_2D_low_9
Description: NF1525_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1525_2D_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 932312 - 932821
Alignment:
| Q |
1 |
tttccagagaaagcaaattgtaatgttgaggttggtttgggagatagtcacaaagttgcaataggttagtagcagatatgtatatgatgttgtttttgtt |
100 |
Q |
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| T |
932312 |
tttccagagaaagcaaattgtaatgttgaggttggtttgggagatagtcacaaagttgcaataggttagtagcagatatgtatatgatgttgtttttgtt |
932411 |
T |
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| Q |
101 |
atttatgtgacttacaaaaaatctctacccatcattgttaatgaaatgagtacaaagaatttgatacacagattttctctggattttcatattttaagta |
200 |
Q |
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| T |
932412 |
atttatgcgacttacaaaaaatctctacccatcattgttaatgaaatgagtacaaagaatttgatacacagattttctctggattttcatattttaagta |
932511 |
T |
|
| Q |
201 |
tatggtatctcttagaaacaggttttagtcatttgtttacatgagagttcgtgacttcttatgctacatcccgttttaatgttatcaggtgctgaacttg |
300 |
Q |
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| T |
932512 |
tatggtatctcttagaaacaggttttagtcatttgtttacatgagagttcgtgacttcttatgctacatcccgttttaatgttatcaggtgctgaaattg |
932611 |
T |
|
| Q |
301 |
aaaatttggtagagttcaagtcttctgttgatttgcggtattctcaggattattatgataatgacaagtcctggaatgacatcattcaaaagattataga |
400 |
Q |
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| T |
932612 |
aaaatttggtagagttcaagtcttctgttgatttgcggtattctcaggattattatgataatgacaagtcctggaatgacatcattcaaaagattataga |
932711 |
T |
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| Q |
401 |
aatacagtctcgagttcaaaatttgaaaaatagatatgagaaggtgatcggtgaaaatccaggaaaattttgttctgtaaatcaattgagcatgcttgga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
932712 |
aatacagtctcgagttcaaaatttgaaaaatagatatgagaaggtgatcggtgaaaatccaggaaaattttgttctgtaaatcaattgagcatgcttgga |
932811 |
T |
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| Q |
501 |
ccgtctgatg |
510 |
Q |
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| T |
932812 |
ccgtctgatg |
932821 |
T |
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