View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1526-2-Insertion-10 (Length: 619)

Name: NF1526-2-Insertion-10
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1526-2-Insertion-10
NF1526-2-Insertion-10
[»] chr8 (23 HSPs)
chr8 (8-579)||(43429045-43429620)
chr8 (276-563)||(1597945-1598237)
chr8 (280-562)||(7186184-7186470)
chr8 (280-562)||(6148245-6148531)
chr8 (282-562)||(41407196-41407480)
chr8 (288-526)||(37127512-37127754)
chr8 (377-562)||(20765696-20765883)
chr8 (284-562)||(40216356-40216637)
chr8 (304-478)||(39949559-39949742)
chr8 (280-562)||(8845555-8845848)
chr8 (308-562)||(43417713-43417966)
chr8 (443-568)||(3346648-3346773)
chr8 (448-508)||(40978833-40978893)
chr8 (438-560)||(3692029-3692151)
chr8 (446-506)||(42845328-42845388)
chr8 (280-391)||(42845201-42845311)
chr8 (411-508)||(23629565-23629663)
chr8 (418-529)||(34474274-34474387)
chr8 (278-362)||(20765613-20765697)
chr8 (280-332)||(25141030-25141082)
chr8 (275-391)||(13125147-13125263)
chr8 (443-472)||(32170870-32170899)
chr8 (440-468)||(38528053-38528081)
[»] chr4 (32 HSPs)
chr4 (280-562)||(16529828-16530113)
chr4 (302-560)||(36284490-36284754)
chr4 (281-567)||(36755111-36755400)
chr4 (282-567)||(46433029-46433316)
chr4 (280-562)||(3533849-3534135)
chr4 (284-554)||(56192216-56192490)
chr4 (277-529)||(3232626-3232870)
chr4 (277-562)||(55692893-55693186)
chr4 (278-501)||(38476139-38476366)
chr4 (278-561)||(13205505-13205774)
chr4 (280-562)||(37996903-37997185)
chr4 (283-544)||(25197260-25197531)
chr4 (392-563)||(44515891-44516062)
chr4 (278-527)||(15024532-15024786)
chr4 (380-562)||(45548999-45549181)
chr4 (394-531)||(17999023-17999160)
chr4 (278-374)||(12832429-12832525)
chr4 (443-562)||(12832302-12832421)
chr4 (300-538)||(44707561-44707801)
chr4 (391-562)||(43334642-43334814)
chr4 (280-524)||(29844982-29845212)
chr4 (278-554)||(37182439-37182737)
chr4 (417-503)||(54183974-54184060)
chr4 (283-524)||(28992514-28992745)
chr4 (277-399)||(43334512-43334630)
chr4 (276-320)||(13919806-13919850)
chr4 (280-368)||(44516074-44516162)
chr4 (292-362)||(45549183-45549253)
chr4 (276-359)||(19477655-19477738)
chr4 (277-319)||(48085403-48085445)
chr4 (278-319)||(43407342-43407383)
chr4 (414-474)||(20491217-20491277)
[»] chr3 (26 HSPs)
chr3 (283-531)||(19332044-19332296)
chr3 (276-563)||(26919175-26919459)
chr3 (282-529)||(20936005-20936254)
chr3 (280-551)||(29078728-29079005)
chr3 (285-527)||(26952389-26952634)
chr3 (385-553)||(48962297-48962465)
chr3 (413-527)||(47495534-47495648)
chr3 (280-553)||(18090362-18090628)
chr3 (306-563)||(11137624-11137886)
chr3 (280-567)||(19554736-19555024)
chr3 (277-567)||(46909767-46910059)
chr3 (418-561)||(10046338-10046479)
chr3 (278-531)||(37333170-37333426)
chr3 (391-563)||(47864845-47865019)
chr3 (391-562)||(20826294-20826466)
chr3 (284-553)||(51370307-51370580)
chr3 (277-390)||(1102783-1102896)
chr3 (417-525)||(47342455-47342564)
chr3 (283-541)||(27371687-27371940)
chr3 (417-503)||(42470985-42471071)
chr3 (288-383)||(47342335-47342430)
chr3 (445-559)||(38521853-38521966)
chr3 (489-526)||(16883009-16883046)
chr3 (453-531)||(44543187-44543265)
chr3 (391-428)||(44542957-44542994)
chr3 (278-326)||(10046250-10046298)
[»] chr7 (30 HSPs)
chr7 (276-562)||(965226-965519)
chr7 (278-562)||(1706375-1706663)
chr7 (312-568)||(41966073-41966331)
chr7 (303-531)||(34519291-34519523)
chr7 (280-562)||(12287078-12287362)
chr7 (278-562)||(35015704-35015992)
chr7 (280-526)||(1910963-1911211)
chr7 (300-530)||(27164155-27164384)
chr7 (417-563)||(6182608-6182754)
chr7 (278-531)||(33037211-33037470)
chr7 (285-458)||(16706585-16706763)
chr7 (285-458)||(17680821-17680999)
chr7 (394-553)||(1778747-1778905)
chr7 (391-525)||(29235519-29235653)
chr7 (438-546)||(2485126-2485234)
chr7 (417-508)||(26576012-26576103)
chr7 (436-526)||(4905101-4905191)
chr7 (303-563)||(22527990-22528259)
chr7 (278-383)||(6182482-6182589)
chr7 (470-561)||(4163261-4163352)
chr7 (278-354)||(35016074-35016150)
chr7 (276-347)||(18273474-18273545)
chr7 (283-398)||(4167292-4167407)
chr7 (280-331)||(41853366-41853417)
chr7 (278-328)||(47066134-47066184)
chr7 (280-398)||(27743809-27743927)
chr7 (278-320)||(41966511-41966553)
chr7 (343-450)||(47066021-47066132)
chr7 (323-428)||(25734619-25734724)
chr7 (486-562)||(32689516-32689592)
[»] chr6 (17 HSPs)
chr6 (280-562)||(32183773-32184059)
chr6 (280-568)||(521161-521454)
chr6 (280-560)||(13185447-13185730)
chr6 (306-551)||(15489400-15489645)
chr6 (280-562)||(15134849-15135140)
chr6 (280-563)||(20969575-20969863)
chr6 (391-562)||(22747069-22747240)
chr6 (284-495)||(15611479-15611695)
chr6 (270-567)||(21208140-21208438)
chr6 (448-562)||(5188237-5188351)
chr6 (276-527)||(3611047-3611296)
chr6 (446-551)||(1040380-1040485)
chr6 (306-479)||(2912704-2912882)
chr6 (278-383)||(6837967-6838072)
chr6 (446-498)||(9908390-9908442)
chr6 (391-554)||(6837781-6837944)
chr6 (576-604)||(20877502-20877530)
[»] chr1 (34 HSPs)
chr1 (280-568)||(29700950-29701240)
chr1 (281-527)||(33016375-33016621)
chr1 (280-567)||(8259278-8259569)
chr1 (278-562)||(20381054-20381324)
chr1 (285-544)||(12140734-12140995)
chr1 (306-553)||(16255288-16255538)
chr1 (331-562)||(50378124-50378359)
chr1 (322-562)||(50377749-50377992)
chr1 (308-562)||(24120172-24120430)
chr1 (280-562)||(39923245-39923520)
chr1 (417-560)||(32714096-32714237)
chr1 (278-554)||(51776541-51776820)
chr1 (275-562)||(15342690-15342962)
chr1 (353-479)||(18236431-18236556)
chr1 (394-562)||(5959190-5959357)
chr1 (411-562)||(25388903-25389054)
chr1 (285-398)||(47024310-47024423)
chr1 (278-561)||(42693308-42693603)
chr1 (438-560)||(48379617-48379739)
chr1 (417-530)||(14625092-14625204)
chr1 (276-370)||(48379468-48379561)
chr1 (277-370)||(14624964-14625057)
chr1 (438-546)||(9693875-9693983)
chr1 (306-527)||(4085533-4085748)
chr1 (280-370)||(43728626-43728716)
chr1 (278-398)||(9694057-9694177)
chr1 (435-503)||(33737187-33737255)
chr1 (277-428)||(33737243-33737397)
chr1 (467-562)||(26450865-26450959)
chr1 (438-531)||(48941406-48941500)
chr1 (284-341)||(25389752-25389809)
chr1 (417-475)||(26451808-26451866)
chr1 (449-489)||(1243774-1243814)
chr1 (439-472)||(51037334-51037367)
[»] scaffold1940 (1 HSPs)
scaffold1940 (278-562)||(545-818)
[»] chr5 (12 HSPs)
chr5 (278-562)||(23418857-23419137)
chr5 (312-555)||(10667307-10667553)
chr5 (277-478)||(19279424-19279629)
chr5 (280-560)||(16561741-16562024)
chr5 (292-531)||(27903561-27903802)
chr5 (417-551)||(35377772-35377906)
chr5 (280-530)||(43100784-43101040)
chr5 (278-398)||(9622359-9622479)
chr5 (440-498)||(7211394-7211453)
chr5 (391-562)||(5422965-5423136)
chr5 (440-479)||(6783516-6783555)
chr5 (275-311)||(39628973-39629009)
[»] chr2 (23 HSPs)
chr2 (277-562)||(9032508-9032806)
chr2 (277-524)||(25322804-25323054)
chr2 (275-562)||(7315172-7315466)
chr2 (417-543)||(38935231-38935357)
chr2 (280-421)||(9548462-9548607)
chr2 (278-395)||(19494728-19494845)
chr2 (394-531)||(20638550-20638687)
chr2 (435-560)||(5732716-5732841)
chr2 (396-506)||(15463999-15464109)
chr2 (443-553)||(43652645-43652755)
chr2 (411-529)||(840149-840267)
chr2 (278-373)||(38935025-38935121)
chr2 (438-509)||(22705648-22705719)
chr2 (279-362)||(6190193-6190276)
chr2 (280-370)||(840296-840384)
chr2 (278-335)||(5732555-5732612)
chr2 (278-335)||(5803073-5803130)
chr2 (459-560)||(19494892-19494993)
chr2 (457-526)||(14169938-14170007)
chr2 (280-318)||(20379783-20379821)
chr2 (277-319)||(32406857-32406899)
chr2 (406-480)||(33047843-33047917)
chr2 (448-521)||(31425295-31425367)
[»] scaffold0069 (1 HSPs)
scaffold0069 (278-562)||(60843-61113)
[»] scaffold0001 (1 HSPs)
scaffold0001 (273-480)||(428276-428490)
[»] scaffold0355 (1 HSPs)
scaffold0355 (278-562)||(2592-2861)
[»] scaffold0006 (2 HSPs)
scaffold0006 (377-562)||(178193-178376)
scaffold0006 (295-362)||(178375-178442)
[»] scaffold0127 (1 HSPs)
scaffold0127 (440-563)||(22871-22995)
[»] scaffold0466 (1 HSPs)
scaffold0466 (391-559)||(193-361)
[»] scaffold0039 (2 HSPs)
scaffold0039 (391-562)||(94147-94317)
scaffold0039 (280-398)||(101628-101746)
[»] scaffold0281 (1 HSPs)
scaffold0281 (278-347)||(22270-22338)
[»] scaffold0043 (1 HSPs)
scaffold0043 (283-368)||(71700-71785)
[»] scaffold0332 (1 HSPs)
scaffold0332 (440-554)||(4392-4507)
[»] scaffold0200 (1 HSPs)
scaffold0200 (577-609)||(3114-3146)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 579
Target Start/End: Original strand, 43429045 - 43429620
Alignment:
Q  8 cctcgttcgttgattgtgttgttgttagagacttgcggcaaaataagacggttcctctgtgtagttagttaatttgatctccacatttaaagaagtatag 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43429045 cctcgttcattgattgtgttgttgttagagacttgcggcaaaataagacggttcctctgtgtagttagttaatttgatctccacttttaaagaagtatag 43429144  T
Q  108 gtgttttatatgtaaatttgatcccgtttggccattgatcttcaagtacctaaaatcatactcttataaatgtagtga-nnnnnnngaagaaagtttgct 206  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  43429145 gtgttttatatgtaaatgtgatccccattggccattgatcttcaagtacctaaaatcatactcttataaatgtagtgattttttttgaagaaagtttgct 43429244  T
Q  207 ttgcatgaatctagcccttccaatagtgatatgattaatgttagcgtttattagagagtagggaaaggttctaagaccatccacaatggtggatgcttaa 306  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43429245 ttgcatgaatctagcccttccaatagtgatatgattaattttagcgtttattagagagtagggaaaggttctaagaccatccacaatggtgggtgcttaa 43429344  T
Q  307 cctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagca----------ctctct 396  Q
    |       |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||          ||||||    
T  43429345 c-------gcaccacattaaataggcacccccattttggagtaaaatatatgggtgcctatggagaagggtggctatagaagcactctctctctctctct 43429437  T
Q  397 cttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataat 496  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||  || |||||||||||    
T  43429438 cttcattttttgttggtcctatttaataaatcctaaaaaattaaataaattttgttgaaatgtaatgatatagaattatttgtggaacttatttaataat 43429537  T
Q  497 ttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaacacgtgtggcctat 579  Q
    ||||||||||||  || |||||||||||||||| |||| || ||||||||||||||||| |||||||||||| ||||||||||    
T  43429538 ttcttttgaggtgttgggttggagaaaattggtacctattatgtactaccgtaaaattaatgatgtaaacacatgtggcctat 43429620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 276 - 563
Target Start/End: Complemental strand, 1598237 - 1597945
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagg 375  Q
    ||||||| ||||||||||| ||  ||||||||||||||||||||| ||||||| ||| |||||||||| ||  ||||| |||| ||| ||| | |||| |    
T  1598237 tctaagatcatccacaatgctgagtgcttaacctatttagcaccatattaaataggcgcccccattgtcgaacaaaatgtatgagtgtctacgaagaatg 1598138  T
Q  376 atggctatagaagcac----tctctcttcatatttt-gttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaa 470  Q
     ||||||| |||||||    ||||||||||| |||| |||| || ||||||||||||| ||| | |||| ||| ||||||||||||||||||||||||||    
T  1598137 gtggctatggaagcacgctctctctcttcatttttttgttgatcatatttaataaatcttaataaattatatatattttgttgaaatgtaatgatataaa 1598038  T
Q  471 attatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    |||||||||| |||||||||||||||||||||||||||  |  ||||||||| |||||||| || ||| || |||||||||||||||||||||    
T  1598037 attatttgtgggacctatttaataatttcttttgaggtgttcggttggagaatattggtgcttattaaatattaccgtaaaattagtgatgta 1597945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 280 - 562
Target Start/End: Original strand, 7186184 - 7186470
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||| ||||||||||| ||||| || |||||||||||  ||||||| ||||| | |||||||||| | |||||||||||| |||||||||||| |||    
T  7186184 agaccatacacaatggtgggtgcttcacatatttagcaccgtattaaataggcactctcattgtggagaataatatatgggtggctatggagaagggtgg 7186283  T
Q  380 ctatagaagcactctctct----tcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattat 475  Q
    |||| ||||||| ||||||    |||| |||  | ||||| |||||||||||| ||| | | ||||||||| ||||| |||| |||||||||||||||||    
T  7186284 ctatggaagcaccctctctatcttcatttttcatgggtcccatttaataaatcttaataaaataaataaatgttgttaaaatataatgatataaaattat 7186383  T
Q  476 ttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
     ||||||||| |||||||||||| |||||||||  || ||||||||||| |||||| || |||||| ||||||||||| ||||||||    
T  7186384 ctgtgagaccaatttaataatttattttgaggtgttgggttggagaaaagtggtgcttattaagtattaccgtaaaatgagtgatgt 7186470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 280 - 562
Target Start/End: Complemental strand, 6148531 - 6148245
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||| ||||| ||||||||| ||||| ||||| |  ||| | |||||||| |||| |||||||||||| ||||||||||||||||    
T  6148531 agaccatccacaatggtgggtgcttcacctatttaacaccatattaa-taagcatctccattgtgaagtataatatatgggtgtctatggagaaggatgg 6148433  T
Q  380 ctatagaagcactctctct------tcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatt 473  Q
    || | ||||||| ||||||      |||| ||| |  |||||||||||||||||| ||| | | |||||||||||||||||||| |||||||||| ||||    
T  6148432 ct-tggaagcaccctctctctttcttcatttttcgcgggtcctatttaataaatcttaataaaataaataaattttgttgaaatttaatgatatagaatt 6148334  T
Q  474 atttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||||| |||||||||||||||||||||| |||| ||| |||| ||||||||| ||| || ||| || ||||||||||| ||||||||    
T  6148333 atttgtgggacctatttaataatttcttttaaggtgctgggttgtagaaaattgatgcttattaaatattaccgtaaaataagtgatgt 6148245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 282 - 562
Target Start/End: Original strand, 41407196 - 41407480
Alignment:
Q  282 accatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggct 381  Q
    ||||||||||||| ||| ||||| | ||||||| ||||| ||||||| ||||||  ||||||||||||||||||||||||| |||| ||||| | |||||    
T  41407196 accatccacaatgatgggtgcttcatctatttaacaccatattaaataggcaccatcattgtggagtaaaatatatgggtggctatagagaatggtggct 41407295  T
Q  382 atagaagcac--tctctcttcatattttg--ttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
    || |||||||  ||||||||| ||||||   | ||| | |||||||||||  ||| | | |||||||||||||||||| |||||||||||||| ||||||    
T  41407296 atggaagcaccctctctcttcttatttttcatgggttccatttaataaattttaatagaataaataaattttgttgaagtgtaatgatataaagttattt 41407395  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||  || |||||||||||||||||||||| | |||||||| | |||||  |||  || |||||| ||||||||||| ||||||||    
T  41407396 gtaggatctatttaataatttcttttgagatgctgagttgcataaaatgagtgtttattaagtattaccgtaaaataagtgatgt 41407480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 526
Target Start/End: Complemental strand, 37127754 - 37127512
Alignment:
Q  288 cacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaa 387  Q
    ||||||||||| ||||| ||||||||| ||||||||||||| |||| || || ||||||||| |||| || |||| |||||||||||  ||||||| |||    
T  37127754 cacaatggtgggtgctttacctatttatcaccacattaaataggcatcctcactgtggagtataataaataggtggctatggagaagagtggctatggaa 37127655  T
Q  388 gca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgaga 483  Q
    |||    || ||||||||| |||  | ||||  |||||||| ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||| ||    
T  37127654 gcaacctctttctcttcatttttcatgggtctcatttaatagatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtggga 37127555  T
Q  484 cctatttaataatttcttttgaggtactgagttggagaaaatt 526  Q
     |||||||||||||| |||| |||| ||  |||||||||||||    
T  37127554 tctatttaataatttattttaaggtgctcggttggagaaaatt 37127512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 377 - 562
Target Start/End: Original strand, 20765696 - 20765883
Alignment:
Q  377 tggctatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatta 474  Q
    ||||||| |||||||  ||||||||||| |||| | ||||| |||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||    
T  20765696 tggctatggaagcaccttctctcttcattttttatgggtccaatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaatta 20765795  T
Q  475 tttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||| |  |||||||||| |||||||| |||| ||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||    
T  20765796 tttgtgggcactatttaatattttcttttaaggtgctgggttggagaaaattgatgcttattaagtattacggtaaaatgagtgatgt 20765883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 284 - 562
Target Start/End: Original strand, 40216356 - 40216637
Alignment:
Q  284 catccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctat 383  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||   ||  || ||||||||||| ||||||  ||||  ||||||||||| ||| |||    
T  40216356 catccacgatggtggatgcttcacctatttagcaccacattaaatacccattcc-attgtggagtataatataatggtggttatggagaagggtggttat 40216454  T
Q  384 agaagcactctct----cttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgt 479  Q
     ||||||| ||||    |||||| |||  | ||||   ||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||| ||    
T  40216455 ggaagcaccctctatctcttcatttttcatgggtcacgtttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattattggt 40216554  T
Q  480 gagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    | | |||||||||||||||||||| ||||  || ||||||  || ||||||  || |||||| ||  ||||||| ||||||||    
T  40216555 ggggcctatttaataatttcttttaaggtgttgggttggaagaatttggtgtttattaagtattatagtaaaatgagtgatgt 40216637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 304 - 478
Target Start/End: Original strand, 39949559 - 39949742
Alignment:
Q  304 taacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac--------tctc 395  Q
    ||||||||||| || |||||||||  | ||||||||||||||| | | |||||||| ||| ||||||||||||||||||| ||| |||        ||||    
T  39949559 taacctatttaacatcacattaaacagacacccccattgtggatttacatatatggatgcttatggagaaggatggctatggaaacaccctctctttctc 39949658  T
Q  396 tcttcatatttt-gttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttg 478  Q
    ||||||| |||| ||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||| |||||||||    
T  39949659 tcttcatttttttgttggtcctatttaataaatcttaataaattaaataaattttgttgaaatgtaacgatatagaattatttg 39949742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 280 - 562
Target Start/End: Original strand, 8845555 - 8845848
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||  ||||||||||||| || |||||||||| ||||||| ||| |||    
T  8845555 agaccatccacaatggtgggtgctttacctatttagcaccacattaaataggcacttccattgtggagtataacatatgggtgcttatggaggagggtgg 8845654  T
Q  380 ctatagaagca----------ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgt--tgaaatgtaatgatat 467  Q
    |||| ||||||          |||||| ||||| |||  | ||||| |||||||||||| ||  | | | ||||||||||||    ||| ||||||||||    
T  8845655 ctatggaagcaccctctctctctctctattcatttttcatgggtcccatttaataaatcttagtaaaatgaataaattttgtaaaaaaacgtaatgatat 8845754  T
Q  468 aaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    | | ||||| ||| | ||||||||||||||| ||||||||| ||  |||||||||||| ||||  || |||||| ||||||| |||  |||||||    
T  8845755 agagttattggtggggcctatttaataattt-ttttgaggtgctaggttggagaaaatcggtgtttattaagtattaccgtacaatgggtgatgt 8845848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 308 - 562
Target Start/End: Complemental strand, 43417966 - 43417713
Alignment:
Q  308 ctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctat-agaagcactctctcttcatattt 406  Q
    ||||||||||||||||||||| ||||| || ||| | ||||| ||||||||| |   ||||||||| | ||||||| | ||||||||||||| ||| |||    
T  43417966 ctatttagcaccacattaaataggcactcc-attatagagtataatatatggatatttatggagaaaggtggctatgaaaagcactctctctacattttt 43417868  T
Q  407 tgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgag 506  Q
     |  | ||| |||||||||||| ||| | | |||| |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||  |||||    
T  43417867 cgcggatcccatttaataaatcttaataaaataaagaaattttgttgaaatgtaatcatacataattatttgtgggacctatttaataatttc-gttgag 43417769  T
Q  507 gtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||  || |||| | ||||| ||||  || |||| | ||||||||||| ||||||||    
T  43417768 gtgttgggttgaaaaaaatcggtgtttattaagaattaccgtaaaatgagtgatgt 43417713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 568
Target Start/End: Complemental strand, 3346773 - 3346648
Alignment:
Q  443 aaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtac 542  Q
    ||||||||||||||||||||||| || ||||||||||   ||||||||||||||||||||||||||  || |||| |||||| |||||  || ||||||     
T  3346773 aaattttgttgaaatgtaatgatttagaattatttgtcgaacctatttaataatttcttttgaggtgttgggttgaagaaaactggtgtttattaagtag 3346674  T
Q  543 taccgtaaaattagtgatgtaaacac 568  Q
    ||||||| ||| |||||||| |||||    
T  3346673 taccgtataatgagtgatgtgaacac 3346648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 448 - 508
Target Start/End: Original strand, 40978833 - 40978893
Alignment:
Q  448 ttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggt 508  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  40978833 ttgttgaaatgtaatgatataaaattatttgtggaacctatttaataatttcttttgaggt 40978893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 438 - 560
Target Start/End: Original strand, 3692029 - 3692151
Alignment:
Q  438 taaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagta 537  Q
    |||||||||||||||||||| |||||||||| |||||||| |   | || ||||||||||||||||||||| ||   ||||||||||||| ||  || ||    
T  3692029 taaataaattttgttgaaatctaatgatatagaattatttattgaaactgtttaataatttcttttgaggttctagattggagaaaattgatgtttatta 3692128  T
Q  538 agtactaccgtaaaattagtgat 560  Q
    |||| ||||||||||| ||||||    
T  3692129 agtattaccgtaaaataagtgat 3692151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 446 - 506
Target Start/End: Original strand, 42845328 - 42845388
Alignment:
Q  446 ttttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgag 506  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||    
T  42845328 ttttgttgaaatgtaatgatatagaattatttgtgggacctatttaataatttattttgag 42845388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 42845201 - 42845311
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||| ||    ||||| ||||||||||||||||||||| || || || ||| |||||||| |||||||||||||||||||||| | |||    
T  42845201 agaccatccacaatgatgtgcacttaatctatttagcaccacattaaataggtactcc-attatggagtaatatatatgggtgcctatggagaatggtgg 42845299  T
Q  380 ctatagaagcac 391  Q
    |||| |||||||    
T  42845300 ctatggaagcac 42845311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 508
Target Start/End: Original strand, 23629565 - 23629663
Alignment:
Q  411 ggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggt 508  Q
    |||||||||||||||||| ||  | | | |||||||||| || ||| ||||||| |||| ||||||||||| || ||| ||||||||||||||||||||    
T  23629565 ggtcctatttaataaatcttagtaaaatgaataaattttattaaaaatgtaatgttatagaattatttgtgggatctaattaataatttcttttgaggt 23629663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 34474387 - 34474274
Alignment:
Q  418 tttaataaatcctaaaatattaaataaattttgttgaaatgtaatg--atataaaattatttgtgagacctatttaataatttcttttgaggtactgagt 515  Q
    ||||||||||| ||| | | ||||||  |||||||||||||||||   ||||| ||   ||| |||||||||||||||||||||||||||  || || ||    
T  34474387 tttaataaatcttaataaaataaatattttttgttgaaatgtaatagtatatagaaaattttatgagacctatttaataatttcttttgatataatgggt 34474288  T
Q  516 tggagaaaattggt 529  Q
    ||||||||||||||    
T  34474287 tggagaaaattggt 34474274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 20765613 - 20765697
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtg 362  Q
    |||||||| |||||||| ||  || |||||||||||||||  | ||||||| ||||| |||||||||||||| |||| |||||||    
T  20765613 taagaccaaccacaatgatgagtgtttaacctatttagcattatattaaataggcactcccattgtggagtataatacatgggtg 20765697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 25141082 - 25141030
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggc 332  Q
    ||||||||||||||||||||||||| | ||||||| ||||| |||||||||||    
T  25141082 agaccatccacaatggtggatgcttcatctatttaacaccatattaaatgggc 25141030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 391
Target Start/End: Original strand, 13125147 - 13125263
Alignment:
Q  275 ttctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaag 374  Q
    |||| ||||||||||||||||||| || || ||||||| |||| |    ||||| ||||||||||||||||||| | || ||| ||||  |||  |||||    
T  13125147 ttcttagaccatccacaatggtgggtgtttcacctattaagcatcgggctaaataggcacccccattgtggagtgatatttattggtgtttataaagaag 13125246  T
Q  375 gatggctatagaagcac 391  Q
    |||| ||||| ||||||    
T  13125247 gatgtctatataagcac 13125263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 472
Target Start/End: Original strand, 32170870 - 32170899
Alignment:
Q  443 aaattttgttgaaatgtaatgatataaaat 472  Q
    ||||||||||||||||||||||||||||||    
T  32170870 aaattttgttgaaatgtaatgatataaaat 32170899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 468
Target Start/End: Complemental strand, 38528081 - 38528053
Alignment:
Q  440 aataaattttgttgaaatgtaatgatata 468  Q
    |||||||||||||||||||||||||||||    
T  38528081 aataaattttgttgaaatgtaatgatata 38528053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 280 - 562
Target Start/End: Original strand, 16529828 - 16530113
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||||| | |||    
T  16529828 agaccatccacaatggtgggtgcttcacctatttagcaccacattaaataggcacccccattgtggagtataatacatgggtggctatggagaatggtgg 16529927  T
Q  380 ctatagaagca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattat 475  Q
    |||| ||||||    |||||||||||| |||  | |||||  ||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||    
T  16529928 ctatggaagcaccatctctctcttcatttttcatgggtcccttttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattat 16530027  T
Q  476 ttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||| ||| |||||||||||||||||| |||  ||| |||||||||||||||||| || |||||| ||| ||||||| ||||||||    
T  16530028 ttgtgggacttatttaataatttcttttaaggagctg-gttggagaaaattggtgcttattaagtattacggtaaaatgagtgatgt 16530113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 302 - 560
Target Start/End: Complemental strand, 36284754 - 36284490
Alignment:
Q  302 cttaacctatttagcaccaca--ttaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac----tctc 395  Q
    |||||||||||||||||||||  |||||| |||||| |||||||||||||||| ||||||||  |||||||||||| || |||| |||||||    ||||    
T  36284754 cttaacctatttagcaccacacattaaataggcacctccattgtggagtaaaacatatgggtatctatggagaagggtgcctatggaagcaccctctctc 36284655  T
Q  396 tcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataa 495  Q
    ||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  36284654 tcttcattttttgttggtcatatttaataaatcttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtgggacctatttaataa 36284555  T
Q  496 tttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgat 560  Q
    |||||||||| ||  || |||||||||||||||| | || |||||  ||| ||||||||| ||||    
T  36284554 tttcttttgaagtgttgtgttggagaaaattggttcttattaagtgttacagtaaaattaatgat 36284490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 281 - 567
Target Start/End: Original strand, 36755111 - 36755400
Alignment:
Q  281 gaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggc 380  Q
    |||||||||||||||||| ||||| | ||||||||||||| ||||||| | |||| ||||||||||||| |||||||||||| |||||||||||| ||||    
T  36755111 gaccatccacaatggtgggtgcttcatctatttagcaccatattaaatagacacctccattgtggagtataatatatgggtggctatggagaagggtggc 36755210  T
Q  381 tatagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatt 476  Q
    ||| |||||||    ||||||||||| |||    ||||  |||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||    
T  36755211 tatggaagcaccctctctctcttcatttttcacgggtcacatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatt 36755310  T
Q  477 tgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaaca 567  Q
    |||  ||| ||||||||||||| | |||||||  || ||| |||||||||||||| || ||| || |||||||||||||||||||||||||    
T  36755311 tgtaggacttatttaataattt-tattgaggtgttgggttagagaaaattggtgcttattaaatattaccgtaaaattagtgatgtaaaca 36755400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 282 - 567
Target Start/End: Complemental strand, 46433316 - 46433029
Alignment:
Q  282 accatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggct 381  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||||| || ||||| ||||||||| || |||||||||||||||||||||||| | |||    
T  46433316 accatccacaatgatgggtgcttaacctatttagcaccactttaaataggtacccc-attgtggagcaatatatatgggtgcctatggagaagggtagct 46433218  T
Q  382 atagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
    || |||||||    ||||||||||| |||||||| |  || |||||||||| |||   ||||||||||||||||||||||||||||||||| ||||||||    
T  46433217 atggaagcaccctctctctcttcattttttgttgatt-taattaataaatcttaatgaattaaataaattttgttgaaatgtaatgatatagaattattt 46433119  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaaca 567  Q
    ||| ||||||||||||||||| |||||||||  ||  ||||||||||||| | | || |||||| ||| ||||| ||| | |||||||||    
T  46433118 gtgggacctatttaataatttattttgaggtgttggattggagaaaattgatacttattaagtattactgtaaatttaataatgtaaaca 46433029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 280 - 562
Target Start/End: Complemental strand, 3534135 - 3533849
Alignment:
Q  280 agaccatccacaatggtgga-tgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatg 378  Q
    ||||||||||||| |||||  ||||| |||||||||||| |||||||||| |||||||||||||||||| | |||||||||||| ||||||||| || ||    
T  3534135 agaccatccacaacggtggggtgcttcacctatttagcatcacattaaataggcacccccattgtggagaataatatatgggtggctatggagatgggtg 3534036  T
Q  379 gctatagaagcactctctct--tcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaattat 475  Q
    |||||  |||||||||||||  |||| |||  | ||||  |||||||||||| ||| | | ||||||||| ||||  ||| |||||||||||||||||||    
T  3534035 gctatgaaagcactctctctcttcatttttcatgggtctcatttaataaatcttaataaaataaataaatattgtaaaaaatgtaatgatataaaattat 3533936  T
Q  476 ttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||| ||||||||||||||||| |||||||||  || ||||||||||| |||||| || |||||| ||||||||||| ||||||||    
T  3533935 ttgtgggacctatttaataatttattttgaggtgttgggttggagaaaaatggtgcttattaagtattaccgtaaaatgagtgatgt 3533849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 284 - 554
Target Start/End: Original strand, 56192216 - 56192490
Alignment:
Q  284 catccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctat 383  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||    
T  56192216 catccacaatggtgggtgctttacctatttaacaccacattaaataggcacccccgttgtggagtaaaatatatgggtgtctatagagaagggtggctat 56192315  T
Q  384 agaagca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgt 479  Q
      |||||    |||||||| ||| ||||||  ||   |||||||||||| ||| | | |||| ||||||||||||| ||| |||||||| |||||| |||    
T  56192316 gaaagcaccctctctctctccattttttgtgagtttcatttaataaatcttaataaaataaagaaattttgttgaattgtgatgatatagaattatatgt 56192415  T
Q  480 gagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaatt 554  Q
    |  ||||||||||||||||||||||||||  || |||||||||||||||||| || |||||| |||| |||||||    
T  56192416 ggaacctatttaataatttcttttgaggtgttgggttggagaaaattggtgcttattaagtattaccataaaatt 56192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 277 - 529
Target Start/End: Complemental strand, 3232870 - 3232626
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    ||||||||||  | |||||||| || ||||||||||||||||||||||||||  |||||| | ||||| ||||||||||||||||||||||||||||||     
T  3232870 ctaagaccatatataatggtgggtgattaacctatttagcaccacattaaattagcaccctcgttgtgaagtaaaatatatgggtgcctatggagaaggg 3232771  T
Q  377 tggctatagaagca--ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatta 474  Q
    ||| ||| ||| ||  |||||||||||| ||||||||||||||||||||||          |||||||||||||||||||||| |||||||||| |||||    
T  3232770 tggttatggaatcaccctctctcttcattttttgttggtcctatttaataa----------attaaataaattttgttgaaatataatgatatagaatta 3232681  T
Q  475 tttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggt 529  Q
    |||||| |||||||||||||||||||||||| ||  ||  |||||||||||||||    
T  3232680 tttgtgggacctatttaataatttcttttgaagtgttggattggagaaaattggt 3232626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 277 - 562
Target Start/End: Complemental strand, 55693186 - 55692893
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    ||||| |||||||||||| ||||||||| | ||||||||||||||||||||| |||| |  |||||||||||| |||  || |||| |||| |||||||     
T  55693186 ctaagtccatccacaatgatggatgcttcatctatttagcaccacattaaataggcatcttcattgtggagtataatgcattggtgactatagagaaggg 55693087  T
Q  377 tggctatagaagcac--------tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatata 468  Q
    ||||||| |||||||        ||||||||||| ||||  ||||||  || |||||||| ||| |   |||||||||||||||||||||||||||||||    
T  55693086 tggctatggaagcaccctctctctctctcttcat-ttttcatggtcccgttgaataaatcttaataacataaataaattttgttgaaatgtaatgatata 55692988  T
Q  469 aaa-ttatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||| ||||||||| |||||||||||||||||||||| || | ||| |||||||||||||||||  ||  ||||| ||| ||||||| ||||||||    
T  55692987 aaaattatttgtgggacctatttaataatttcttttaagatgctgggttggagaaaattggtgtttatcaagtattacagtaaaatgagtgatgt 55692893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 278 - 501
Target Start/End: Complemental strand, 38476366 - 38476139
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||||| | |||||||| ||||| ||||||||||||||||||||||| | |||||||||| || |||| ||||||||||||  ||||||||| | |    
T  38476366 taagaccatctataatggtgggtgcttcacctatttagcaccacattaaatagacacccccattatgaagtataatatatgggtggttatggagaaaggt 38476267  T
Q  378 ggctatagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatt 473  Q
    || ||| |||||||    ||||||||||| |||  | || |  |||||||||||| ||| | | ||||||||||||||||||||||||||||||||||      
T  38476266 ggttatggaagcacgttctctctcttcatttttcatgggccacatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaaaa 38476167  T
Q  474 atttgtgagacctatttaataatttctt 501  Q
    |||| || ||||||||||||||||||||    
T  38476166 atttatgggacctatttaataatttctt 38476139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 278 - 561
Target Start/End: Complemental strand, 13205774 - 13205505
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||| | || | |||||||| ||||||||||||||||| ||||| |           
T  13205774 taagaccatccacaatggtgggtgcttaacctatttagtaccacattaaatagacatctccattgtgaagtaaaatatatgggtgtctatgaa------- 13205682  T
Q  378 ggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
          || | || ||||||||||| ||     | ||||||| | |||||  ||| | ||||||||||||||||||||||||||| |||| |||||||||    
T  13205681 ------agcacca-tctctcttcattttccccggatcctattaattaaattttaataaattaaataaattttgttgaaatgtaataatatcaaattattt 13205589  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatg 561  Q
    ||| ||| |||||||||||||||||||||||  || |||||||||||||  ||| ||||||| | ||||||||||||| |||||    
T  13205588 gtgggacttatttaataatttcttttgaggtgttgggttggagaaaattaatgcttagtaaggattaccgtaaaattaatgatg 13205505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 280 - 562
Target Start/End: Original strand, 37996903 - 37997185
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||| | || || |||||||||||| ||||||||| |||  || ||| ||| |||    
T  37996903 agaccatccacaatggtggatgcttcttctatttagcaccacattaaatagacatcctcattgtggagtataatatatggttgctaatcgaggagggtgg 37997002  T
Q  380 ctatagaagca--ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
    |||  ||||||  |||||||||||| |||| | ||||  ||||||||| |  |   | | | ||||||||||||||||||| ||||||| ||| || |||    
T  37997003 ctacggaagcactctctctcttcat-ttttttgggtctcatttaataagtttttgtaaaatgaataaattttgttgaaatgaaatgatacaaagtt-ttt 37997100  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||| ||| ||||| ||||||||||||||| | ||| |||| ||||||||||||| || |||||| || |||||||||| ||||||    
T  37997101 gtgggacatattttataatttcttttgagatgctgggttgaagaaaattggtgcttattaagtattatcgtaaaattaatgatgt 37997185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 283 - 544
Target Start/End: Complemental strand, 25197531 - 25197260
Alignment:
Q  283 ccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggcta 382  Q
    |||||||||||||||| ||||| |||||||||| |||  | ||||| |||||||||||||||||||| ||||| | ||||| ||| ||||| | ||||||    
T  25197531 ccatccacaatggtgggtgcttcacctatttagaaccgtaataaattggcacccccattgtggagtataatatttaggtgcttatagagaatggtggcta 25197432  T
Q  383 tagaagcac----tctctcttcatattttgttggtc------ctatttaataaatcctaaaatattaaataaatttt-gttgaaatgtaatgatataaaa 471  Q
    | |||| ||    ||||||||||  |||||| || |      | |||||||||||| |||   | |||||||||||| ||||||||||||||||||  ||    
T  25197431 tggaaggaccctctctctcttcactttttgt-ggacaccacaccatttaataaatcataatgaaataaataaattttagttgaaatgtaatgatatggaa 25197333  T
Q  472 ttatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtacta 544  Q
    ||||||||| |||||||||| |||||||||||| |||  || |||||||||||||| |||||| |||||||||    
T  25197332 ttatttgtgggacctatttagtaatttcttttgtggtgttgggttggagaaaattgatgcctattaagtacta 25197260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 392 - 563
Target Start/End: Complemental strand, 44516062 - 44515891
Alignment:
Q  392 tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctattta 491  Q
    ||||||||||| |||  | ||||| |||||||||||  ||| | | ||||||||||||||||||||||||||||||||||||||| ||| || |||||||    
T  44516062 tctctcttcatttttcatgggtcccatttaataaatattaataaaataaataaattttgttgaaatgtaatgatataaaattattagtgggatctattta 44515963  T
Q  492 ataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    |||||||||||| |||| ||| ||||||||||||  |||  || |||||| ||||||||||| | |||||||    
T  44515962 ataatttcttttaaggtgctgggttggagaaaatcagtgattattaagtattaccgtaaaatgaatgatgta 44515891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 278 - 527
Target Start/End: Complemental strand, 15024786 - 15024532
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||||||| ||| |||||||||| |||||||||||| || ||||||| |||||| ||||| ||||||| ||||| | | || || | ||||||| |    
T  15024786 taagaccatccataatagtggatgcttcacctatttagcatcatattaaataggcacctccattatggagtataatattttgatgtctctagagaagggt 15024687  T
Q  378 ggctatagaagca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaatttt-gttgaaatgtaatgatataaaat 472  Q
    |||||| ||||||    |||||||| ||  ||||||    || |||||||||||| |||   | |||||| ||||| |||||||| |||||||||  |||    
T  15024686 ggctatggaagcatcctctctctctacactttttgtgaaccccatttaataaatcataatgaaataaatatatttttgttgaaatataatgatattgaat 15024587  T
Q  473 tatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattg 527  Q
    |||||||| ||||||||||||||||| ||||| ||||||| ||| ||||||||||    
T  15024586 tatttgtgggacctatttaataatttattttgtggtactgggttagagaaaattg 15024532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 380 - 562
Target Start/End: Complemental strand, 45549181 - 45548999
Alignment:
Q  380 ctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgt 479  Q
    |||| ||||||| |||||||||| |||  | ||||| | |||||||||| ||| | | ||||||||| ||||| |||||||||||||||||||||| |      
T  45549181 ctatggaagcaccctctcttcatttttcatgggtcccaattaataaatcttaataaaataaataaatgttgttaaaatgtaatgatataaaattatcttg 45549082  T
Q  480 gagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    | ||| ||||||||||||| |||| |||| ||| ||||||||||| |||||| || |||||| ||||||||||| ||||||||    
T  45549081 gggacttatttaataatttattttaaggtgctgggttggagaaaagtggtgcttattaagtattaccgtaaaatgagtgatgt 45548999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 394 - 531
Target Start/End: Original strand, 17999023 - 17999160
Alignment:
Q  394 tctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaat 493  Q
    ||||||||| |||  | ||||| |||||||||||| ||  | | ||||||||||||||  ||||||||||||||| | |||||||| |||||||||||||    
T  17999023 tctcttcatttttcatgggtcccatttaataaatcgtattaaaataaataaattttgtaaaaatgtaatgatatagagttatttgtaagacctatttaat 17999122  T
Q  494 aatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    ||||||||||||||||||  ||| ||||||||||||||    
T  17999123 aatttcttttgaggtactaggttagagaaaattggtgc 17999160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 278 - 374
Target Start/End: Complemental strand, 12832525 - 12832429
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaag 374  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||| ||||| |||||    
T  12832525 taagaccatctacaatggtgggtgcttcacctatttagcaccacattaaatcggcacccctattgtggagtataatacatgggtggctatgaagaag 12832429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 443 - 562
Target Start/End: Complemental strand, 12832421 - 12832302
Alignment:
Q  443 aaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtac 542  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||  || |  ||||||||||||||| || ||||||     
T  12832421 aaattttgttgaaatgtaataatataaaattatttgtcggacctatttaataatttctttttaggtgttgggccggagaaaattggtgcttactaagtat 12832322  T
Q  543 taccgtaaaattagtgatgt 562  Q
    ||| |||| || ||||||||    
T  12832321 tacggtaacatgagtgatgt 12832302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 300 - 538
Target Start/End: Complemental strand, 44707801 - 44707561
Alignment:
Q  300 tgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcactct--ctc 397  Q
    ||||| ||||||||||||| | ||||||| | || |  |||||||||||| ||||| ||| |||||| | |||||| || |||||||| ||| ||  |||    
T  44707801 tgctttacctatttagcactatattaaatagacatcatcattgtggagtataatatttggatgcctaagaagaagggtgactatagaaacaccctttctc 44707702  T
Q  398 ttcatattttgttggtcctatttaataaatcctaaaatattaaataaatttt-gttgaaatgtaatgatataaaattatttgtgagacctatttaataat 496  Q
    | ||  |||||| |  || |||||||||||| |||   | |||||||||||| ||||||||||||||||||| ||||||||||| || ||||||  ||||    
T  44707701 tccactttttgtagaccccatttaataaatcataatgaaataaataaatttttgttgaaatgtaatgatatataattatttgtgggatctattttgtaat 44707602  T
Q  497 ttcttttgaggtactgagttggagaaaattggtgcctagtaa 538  Q
    ||||||||  || ||| |||||||||||||| ||| ||||||    
T  44707601 ttcttttgtcgtgctg-gttggagaaaattgatgcttagtaa 44707561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 391 - 562
Target Start/End: Original strand, 43334642 - 43334814
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaattatttgtgagacctatt 489  Q
    |||||||||||| |||  | |||||||||||||||||| ||  | | | ||||||||||||| ||| |||||||||||| | |||||| ||||||||| |    
T  43334642 ctctctcttcatttttcatgggtcctatttaataaatcttagtaaaatgaataaattttgttaaaaatgtaatgatatagagttatttatgagacctaat 43334741  T
Q  490 taataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||||||||||||||| |  || |||  ||||||||| ||| || |||||| ||| |||||||| |||||||    
T  43334742 taataatttcttttgagatgttgggtttaagaaaattgatgcttattaagtattacagtaaaattggtgatgt 43334814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 524
Target Start/End: Complemental strand, 29845212 - 29844982
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||| | ||  ||||||||| ||||||||||||| || |||||| |||||||| | |||||||| ||| | || ||||||| |||    
T  29845212 agaccatccacaatggtgggtcctccacctatttaacaccacattaaataggtacccccgttgtggagaataatatatgcgtgac-attgagaagggtgg 29845114  T
Q  380 ctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgt 479  Q
    |||| ||||||| ||||||             ||| |  ||  | |||| ||| | | ||||||||| |||   |||||||||||||| |||||||||||    
T  29845113 ctatggaagcaccctctct-------------gtcttcattttttaatcttaataaaataaataaatgttggcaaaatgtaatgatatcaaattatttgt 29845027  T
Q  480 gagacctatttaataatttcttttgaggtactgagttggagaaaa 524  Q
    ||||||||||||||||||| ||||||| | ||| |||||||||||    
T  29845026 gagacctatttaataatttattttgagatgctgggttggagaaaa 29844982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 554
Target Start/End: Complemental strand, 37182737 - 37182439
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcac------cacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggag 371  Q
    ||||||||||||||||||||| || || |||||||||||||      || |||||||  |||||| |||||||||||  || ||||||||| ||||||||    
T  37182737 taagaccatccacaatggtgggtgtttcacctatttagcacgtgcaccatattaaataagcaccctcattgtggagtgtaacatatgggtgtctatggag 37182638  T
Q  372 aaggatggctatagaagcac----------------tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgtt-ga 454  Q
     ||| |||||||||||||||                ||||||||||| |||  | ||||| || ||||||||| ||  | | | ||||||||||| | ||    
T  37182637 gagggtggctatagaagcaccctccacccctctctctctctcttcatttttcatgggtcccatctaataaatcttagtaaaatgaataaattttggtaga 37182538  T
Q  455 aatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaatt 554  Q
    |||||||| ||||| | ||||||||| ||||| ||||||||||||||||||||||||   ||||| ||||||| ||| || |||||| || | |||||||    
T  37182537 aatgtaataatatagagttatttgtgggacct-tttaataatttcttttgaggtactcgattggaaaaaattgatgcttattaagtattatcataaaatt 37182439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 417 - 503
Target Start/End: Complemental strand, 54184060 - 54183974
Alignment:
Q  417 atttaataaatcctaa-aatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttctttt 503  Q
    |||||||||||| ||| ||||| ||||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||    
T  54184060 atttaataaatcttaataatat-aaataaaatttgttgaaatgtaatgatatataattatttatgggacctatttaataatttttttt 54183974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 283 - 524
Target Start/End: Complemental strand, 28992745 - 28992514
Alignment:
Q  283 ccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggcta 382  Q
    ||||||||||| |||| ||||| ||||||||||||||| | ||||| | || ||||||||||||||| ||||| || |||  || |||||||| || |||    
T  28992745 ccatccacaattgtgggtgcttcacctatttagcaccatactaaatagaca-ccccattgtggagtataatatttgagtgtgtacggagaagggtgacta 28992647  T
Q  383 tagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgag 482  Q
    | |||| ||||||||         | ||   || |||||||||||| |||   | |||||||| |||| |  ||| |||||||||| |||||||||||      
T  28992646 tggaagtactctctc---------tcttcaccccatttaataaatcataatgaaataaataaaatttggttgaatataatgatatagaattatttgtgga 28992556  T
Q  483 acctatttaataatttcttttgaggtactgagttggagaaaa 524  Q
    ||||||||| ||||||| |||| ||| ||| |||||||||||    
T  28992555 acctatttagtaatttcctttgcggtgctgggttggagaaaa 28992514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 277 - 399
Target Start/End: Original strand, 43334512 - 43334630
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    ||||||||||||||||||    |||||  | ||||||||||||||||||||| |  | |||| |||||||| | || |||||||||| ||| ||| |||     
T  43334512 ctaagaccatccacaatg----atgctccatctatttagcaccacattaaatagatatccccgttgtggagcataacatatgggtgcttatagaggaggg 43334607  T
Q  377 tggctatagaagcactctctctt 399  Q
    ||||||| |||||||||||||||    
T  43334608 tggctatggaagcactctctctt 43334630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 13919806 - 13919850
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcacca 320  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  13919806 tctaagactatccacaatggtggatgtttaacctatttagcacca 13919850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 44516162 - 44516074
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatg 368  Q
    |||||||||| |||| || |||||| |||||||||||||||||||||||   ||||||  ||||||| || |||| ||||||| |||||    
T  44516162 agaccatccaaaatgatgaatgcttcacctatttagcaccacattaaataaacacccctgttgtggaatataatacatgggtggctatg 44516074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 45549253 - 45549183
Alignment:
Q  292 atggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtg 362  Q
    ||||||| || || ||||||||||||||||||||||| | |||| ||||||| ||| | ||||||||||||    
T  45549253 atggtgggtgtttcacctatttagcaccacattaaatagacacctccattgtagagaataatatatgggtg 45549183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 359
Target Start/End: Complemental strand, 19477738 - 19477655
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgg 359  Q
    |||||||||||||| |||  ||| || || ||||||||| ||||||||||||| || | | | ||||||||||| |||||||||    
T  19477738 tctaagaccatccataataatgggtgtttcacctatttatcaccacattaaataggtatctctattgtggagtataatatatgg 19477655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 48085403 - 48085445
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcacc 319  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||    
T  48085403 ctaagagcatccacaatggtgggtgcttcacctatttagcacc 48085445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 43407383 - 43407342
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcacc 319  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||    
T  43407383 taagagcatccacaatggtgggtgcttcacctatttagcacc 43407342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 20491277 - 20491217
Alignment:
Q  414 cctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatta 474  Q
    ||||||||||||||| ||  | | |||||||||||| ||||||| ||||||||||| ||||    
T  20491277 cctatttaataaatcatactaaaataaataaattttattgaaatttaatgatataagatta 20491217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 283 - 531
Target Start/End: Complemental strand, 19332296 - 19332044
Alignment:
Q  283 ccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggcta 382  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||| | |||| | ||||||||||||| ||||||| |  |||||||||||| | ||||    
T  19332296 ccatccacaatggcggatgcttaacctatttagcaccacgttaaatagacacctctattgtggagtaaagtatatggatatctatggagaagggtagcta 19332197  T
Q  383 tagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttg 478  Q
    | |||| ||    ||||||||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||| | ||||||||||||||||||||    
T  19332196 tggaagaaccctttctctcttcattttttgttggtcctatttaataaatcttaataaattaaataaattttgttgaattataatgatataaaattatttg 19332097  T
Q  479 tgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    || ||| |||||||||||||||||||||||  || ||||||||||||||||||    
T  19332096 tgggacttatttaataatttcttttgaggtgttgggttggagaaaattggtgc 19332044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 276 - 563
Target Start/End: Complemental strand, 26919459 - 26919175
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagg 375  Q
    ||||||| ||||||||||||||||||||| || |||||||||||| |||||||  ||||||||||||| ||||| |||||||||||     ||||||| |    
T  26919459 tctaagatcatccacaatggtggatgcttcacatatttagcaccatattaaataagcacccccattgtagagtataatatatgggt-----tggagaatg 26919365  T
Q  376 atggctatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatt 473  Q
     ||||||| |||||||  ||||||||||| |||||  ||||| |||||||||||  |||   | ||||||||||||||||||||||||||||||||||||    
T  26919364 gtggctatggaagcaccttctctcttcattttttgcgggtcccatttaataaattttaattcaataaataaattttgttgaaatgtaatgatataaaatt 26919265  T
Q  474 atttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    |||| || ||||||||||||||||||||||||| ||||  ||| |||||| || || | || ||| || ||||||||||| | |||||||    
T  26919264 atttatgggacctatttaataatttcttttgagatactatgttagagaaagtttgtccttaataaatattaccgtaaaataaatgatgta 26919175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 282 - 529
Target Start/End: Complemental strand, 20936254 - 20936005
Alignment:
Q  282 accatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggct 381  Q
    ||||||||||||| ||||||||||| |||||||  ||||| |||||| || ||||| |||||||||||| |||||| ||||||||||||||||| |||||    
T  20936254 accatccacaatgatggatgcttaatctatttaataccactttaaataggtacccc-attgtggagtaatatatataggtgcctatggagaagggtggct 20936156  T
Q  382 atagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
    || |||||||    ||||||||||| |||| ||| |  || |||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  20936155 atggaagcaccctctctctcttcattttttattgatt-taattaataaatcttaataaattaaataaattttgttgaaatgtaatgatatagaattattt 20936057  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggt 529  Q
    ||| | ||||||||||||||| |||||||||  ||  ||| |||||||||||    
T  20936056 gtggggcctatttaataatttattttgaggtgttggattgaagaaaattggt 20936005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 280 - 551
Target Start/End: Complemental strand, 29079005 - 29078728
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||| ||  ||||||||||||||| ||||||||||||| || ||||| |||||||||||| ||| ||||||| |||||||||||| |||    
T  29079005 agaccatccacaatgatgagtgcttaacctatttaacaccacattaaataggtacccc-attgtggagtaatatacatgggtgtctatggagaagggtgg 29078907  T
Q  380 ctatagaagcac--------tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaa 471  Q
    |||| |||||||        ||||||||||| |||||||| |  || |||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||    
T  29078906 ctatggaagcaccctctctctctctcttcattttttgttgatt-taattaataaatcttaataaattaagtaaattttgttgaaatgtaatgatatagaa 29078808  T
Q  472 ttatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaa 551  Q
    |||||| || ||||||||||||||||| |||||| ||  ||  ||||||||||||| ||| || |||||| || ||||||    
T  29078807 ttatttatgggacctatttaataatttattttgaagtgttggattggagaaaattgatgcttattaagtattatcgtaaa 29078728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 285 - 527
Target Start/End: Complemental strand, 26952634 - 26952389
Alignment:
Q  285 atccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctata 384  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||| | |||| ||||||||||||| ||||| |||||||||||||| |||  || ||||     
T  26952634 atccacaatggtgggtgcttcacctatttagcaccatattaaatagacacctccattgtggagtataatatttgggtgcctatggacaagagtgactatg 26952535  T
Q  385 gaagcactctctct-tcata--ttttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtga 481  Q
    ||||||| |||||| || |   ||||   |  ||||||||||||||| |||   | ||||||| |||||||||||||||||||||||||||||||||| |    
T  26952534 gaagcaccctctctctcttcgcttttacggaccctatttaataaatcataatgaaataaataatttttgttgaaatgtaatgatataaaattatttgtta 26952435  T
Q  482 gacctatttaataatttcttttgaggtactgagttggagaaaattg 527  Q
    ||||||||||||||||||||||| ||| ||| |||||||| |||||    
T  26952434 gacctatttaataatttcttttgtggtgctgggttggagacaattg 26952389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 385 - 553
Target Start/End: Original strand, 48962297 - 48962465
Alignment:
Q  385 gaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagac 484  Q
    ||||||| |||||||||| |||  | ||| | |||||||||||  ||| | | ||||||| |||||||||| |||||||||||||||||||||||  |||    
T  48962297 gaagcaccctctcttcatttttcatgggttccatttaataaattttaataaaataaataatttttgttgaattgtaatgatataaaattatttgtatgac 48962396  T
Q  485 ctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaat 553  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||| || |||||| |||||||||||    
T  48962397 ctatttaataatttcttttgaggtgctgagttggagaaaatgagtgcttattaagtattaccgtaaaat 48962465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 413 - 527
Target Start/End: Original strand, 47495534 - 47495648
Alignment:
Q  413 tcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactg 512  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |  || ||||||||||||||||||| ||||||||    
T  47495534 tcctatttaataaatcttaataaattaaataaattttgttgaaatgtaatgatataaaattatttatatgagctatttaataatttctttttaggtactg 47495633  T
Q  513 agttggagaaaattg 527  Q
    |||| ||||||||||    
T  47495634 agttagagaaaattg 47495648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 280 - 553
Target Start/End: Original strand, 18090362 - 18090628
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||   ||| ||||||||||||||||||  ||||         
T  18090362 agaccatccacaatggtggatgcttcatctatttagcaccacattaaataggcacctccattgttatgtataatatatgggtgcctatg--gaag----- 18090454  T
Q  380 ctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgt 479  Q
          |  | ||||||| |||| |||| | ||||  |||||||||||| ||| | | ||||||||| ||||| ||||| ||||||||||||||||||||    
T  18090455 -----caccctctctctcatcattttttatgggtctcatttaataaatcttaataaaataaataaatgttgttaaaatggaatgatataaaattatttgt 18090549  T
Q  480 gagacctatttaata-----atttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaat 553  Q
    | |||||| ||||||     |||| ||||||||| ||| ||||||||||| || | | || |||||| |||||||||||    
T  18090550 gggacctagttaataattatatttattttgaggtgctgggttggagaaaagtgatacttattaagtattaccgtaaaat 18090628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 306 - 563
Target Start/End: Original strand, 11137624 - 11137886
Alignment:
Q  306 acctatttagcaccacattaaatgggcacccccattgtggagtaaaatatat--gggtgcctatggagaaggatggctatagaagcac----tctctctt 399  Q
    ||||||||| |||||||||||||  ||| |   ||||||||||| ||||||   |||||||||| ||||| |||| |||| |||||||    ||||||||    
T  11137624 acctatttaacaccacattaaataagcatcat-attgtggagtataatatacaggggtgcctatagagaatgatgactatggaagcaccctctctctctt 11137722  T
Q  400 catattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttc 499  Q
    ||| |||||  ||||  ||||||||| || | | |   ||||||||||||||||||||| ||||||||||||||||||||  || ||||||||||| |||    
T  11137723 cattttttgcgggtctcatttaataattcttcataagataaataaattttgttgaaatgcaatgatataaaattatttgtaggatctatttaataacttc 11137822  T
Q  500 ttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    |||||||||  || ||||||||||||| || | || |||||| |||  |||||| |||||||||    
T  11137823 ttttgaggtgttgggttggagaaaattagtacttattaagtattacaataaaatgagtgatgta 11137886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 280 - 567
Target Start/End: Complemental strand, 19555024 - 19554736
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||||||||||||||||||||  |||||||| ||| | ||||||| ||||  || ||||||||||| ||||||||| ||  ||| ||| ||| ||     
T  19555024 agaccatccacaatggtggatgcttctcctatttaccactatattaaataggcattcctattgtggagtataatatatggatg-ttatagaggagggtga 19554926  T
Q  380 ctatagaagca--ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaa-atgtaatgatataaaattatt 476  Q
    |||| ||||||  |||||||||||| |||  | ||| | |||||||||||| ||  | | |||| ||| |||||| || ||||||||||||| | |||||    
T  19554925 ctatggaagcactctctctcttcatttttcatgggttccatttaataaatcttagtaaaataaaaaaaatttgttaaatatgtaatgatatagagttatt 19554826  T
Q  477 tgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaaca 567  Q
    | || |  |||||||||||||||||||||||| ||| |||||||||||||| | | || | |||| ||| |||||||| ||||||| ||||    
T  19554825 tatg-gggctatttaataatttcttttgaggtgctgggttggagaaaattgattcttattcagtattactgtaaaattggtgatgtgaaca 19554736  T

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Target: chr3; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 277 - 567
Target Start/End: Complemental strand, 46910059 - 46909767
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    |||||| ||||||| ||||||| |||||  |||||||| |  || ||||||| || ||  ||||||||||||| ||||||||| ||  |||  || |||     
T  46910059 ctaagatcatccacgatggtgggtgcttctcctatttaccgtcatattaaataggtacttccattgtggagtataatatatggatgtttataaaggaggg 46909960  T
Q  377 tggctatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgtt-gaaatgtaatgatataaaatt 473  Q
    ||||||| |||||||  | |||||||||||||  | ||||| |||||||||||| ||| | | ||||||| |||||||  ||||||||||||||||| ||    
T  46909959 tggctatggaagcaccatttctcttcatatttcatgggtcccatttaataaatcttaataaaataaataatttttgttaaaaatgtaatgatataaagtt 46909860  T
Q  474 atttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaaca 567  Q
    ||||||| || ||||||||||||||||||||| ||  |  | |||||||||||||| | |  | |||| ||||||||||||  |||||| ||||    
T  46909859 atttgtg-gagctatttaataatttcttttgaagtgttaggctggagaaaattggttcttcttcagtattaccgtaaaattgatgatgtgaaca 46909767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 418 - 561
Target Start/End: Original strand, 10046338 - 10046479
Alignment:
Q  418 tttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttg 517  Q
    ||||||||||| ||| | | ||||||||| ||||| |||| |||||||||||||||||||||| |||||||| |||||||  | ||||||| ||| ||||    
T  10046338 tttaataaatcttaataaaataaataaatgttgttaaaatttaatgatataaaattatttgtgggacctattgaataatt--tattgaggtgctgggttg 10046435  T
Q  518 gagaaaattggtgcctagtaagtactaccgtaaaattagtgatg 561  Q
    ||||||| |||||| || |||||| ||||||||||| |||||||    
T  10046436 gagaaaagtggtgcttattaagtattaccgtaaaatgagtgatg 10046479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 278 - 531
Target Start/End: Original strand, 37333170 - 37333426
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||||| | || || |||||||||||| || |||| ||||| || |||||||| |    
T  37333170 taagactatccacaatggtgggtgcttcacctatttagcaccacattaaatagacatcctcattgtggagtataacatatcggtgcttacggagaagggt 37333269  T
Q  378 ggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgtt-gaaatgtaatgatataaaattatt 476  Q
    |||||| ||||||| |||||||||  |||  | ||||  |||||||||| | ||  | | | |||||||| ||||  |||||||| | |||| | |||||    
T  37333270 ggctatggaagcaccctctcttcaattttcatgggtcacatttaataaaccttagtaaaatgaataaattatgttaaaaatgtaacggtatagagttatt 37333369  T
Q  477 tgtgagacct-atttaat-aatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    |||| | ||| | ||||| ||||| || ||||||  |||||||||||||||||||||    
T  37333370 tgtggggcctaagttaataaattttttatgaggttatgagttggagaaaattggtgc 37333426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 391 - 563
Target Start/End: Complemental strand, 47865019 - 47864845
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctattt 490  Q
    |||||||||||| |||  | ||||  |||||||||||  ||| | | ||||||||||||||||||||||||||||| ||||||||||||   || |||||    
T  47865019 ctctctcttcatttttcatgggtcacatttaataaattttaataaaataaataaattttgttgaaatgtaatgataaaaaattatttgtagaacttattt 47864920  T
Q  491 aata--atttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    ||||  | || ||||||||| ||| |||||||||||||| ||  || |||||| ||||||||||| |||||||||    
T  47864919 aatagtaatttttttgaggtgctgggttggagaaaattgatgtttattaagtattaccgtaaaatgagtgatgta 47864845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 391 - 562
Target Start/End: Original strand, 20826294 - 20826466
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaattatttgtgagacctatt 489  Q
    |||||||||||| |||| |  |||  |||||||||||| ||  ||| | ||||||||||||| ||| ||||||||| || | ||||| ||| ||||||||    
T  20826294 ctctctcttcattttttatgagtcacatttaataaatcttagtataatgaataaattttgttaaaaatgtaatgatctagagttattggtgggacctatt 20826393  T
Q  490 taataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
     |||||||| |||||||||  || |||||||||||||| ||| || |||||| |||||||||||| |||||||    
T  20826394 caataatttattttgaggtgttgggttggagaaaattgatgcttattaagtattaccgtaaaattggtgatgt 20826466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 284 - 553
Target Start/End: Original strand, 51370307 - 51370580
Alignment:
Q  284 catccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctat 383  Q
    ||||||||||||||| |||||   |||||||  |||| |||||||  |||  || |||||| | || ||||| || ||| |||| ||||||  |||||||    
T  51370307 catccacaatggtgggtgcttcgtctatttaataccatattaaatatgcattcctattgtgcaatataatatttgagtgtctatagagaagagtggctat 51370406  T
Q  384 agaagcactctctct--tcatattttgttggtcctatttaataaatcctaaaatattaaataaatttt-gttgaaatgtaatgatataaaattatttgtg 480  Q
     ||| ||||||||||  |||  |||||| | |||||||||||||||| |||   | |||||||||||| |||||||| ||||||||| ||||||||||      
T  51370407 ggaaacactctctctcttcactttttgtggatcctatttaataaatcataatgaaataaataaatttttgttgaaatataatgatatgaaattatttgca 51370506  T
Q  481 agacctatttaataatttcttt-tgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaat 553  Q
     | |||||||  |||||||||| ||  |  || ||||||||||||||||||| || |||||||||  |||||||    
T  51370507 gggcctatttggtaatttctttgtggtgctctaagttggagaaaattggtgcttattaagtactattgtaaaat 51370580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 1102783 - 1102896
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    ||||||||||||||||||||   ||||| |||||| |||||||||||||||| | ||| | |||||||||||| || |||||||||||| |  || |||     
T  1102783 ctaagaccatccacaatggtacgtgcttcacctatgtagcaccacattaaatagacacactcattgtggagtataacatatgggtgcctgtcaaggaggg 1102882  T
Q  377 tggctatagaagca 390  Q
    ||| ||||||||||    
T  1102883 tggttatagaagca 1102896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 525
Target Start/End: Original strand, 47342455 - 47342564
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttg-ttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagt 515  Q
    |||||||||||| |||   | ||||||||||||| |||||||||||||||||| ||||| || || |||||||||| ||||||| ||||||||  || ||    
T  47342455 atttaataaatcataatgaaataaataaattttggttgaaatgtaatgatatataattacttctgggacctatttagtaatttcatttgaggtgatgggt 47342554  T
Q  516 tggagaaaat 525  Q
    || |||||||    
T  47342555 tgaagaaaat 47342564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 541
Target Start/End: Original strand, 27371687 - 27371940
Alignment:
Q  283 ccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatg-gagaaggatggct 381  Q
    |||||||||||||||| || || ||||||||| ||| | | ||||| ||||||||| |||||||||| ||||| ||| |||||||| || ||   ||| |    
T  27371687 ccatccacaatggtgggtgtttcacctatttaacactatactaaataggcaccccctttgtggagtataatatttggatgcctatgagaaaaaagtggtt 27371786  T
Q  382 atagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaat-aaattttgttgaaatgtaatgatataaaattatttgtg 480  Q
    || ||||||| |||||       | | ||  ||| |||||||||||| |||   | ||||| |||||| |||||| |  ||||||||||||||||||||     
T  27371787 atggaagcaccctctc-------tcttttcatcccatttaataaatcataatgaaataaataaaatttagttgaattaaaatgatataaaattatttgta 27371879  T
Q  481 agacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagta 541  Q
     |||||||||| ||||||  |||| ||| ||| |||||||||||  ||||| || ||||||    
T  27371880 cgacctatttattaattttctttgcggttctgggttggagaaaaacggtgcttattaagta 27371940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 42470985 - 42471071
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttctttt 503  Q
    |||||||||||| ||| | | |||| |  ||||||||||||||||||||||| |||||| | ||| | |||||||||||||||||||    
T  42470985 atttaataaatcttaataaaataaacattttttgttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 42471071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 47342335 - 47342430
Alignment:
Q  288 cacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctat 383  Q
    ||||||||||| | ||| ||||||||| || || | ||||  |||||| | ||||||||||| ||||| ||||||| ||||||||| |||||||||    
T  47342335 cacaatggtgggtacttcacctatttaacagcatactaaacaggcacctctattgtggagtataatatttgggtgcttatggagaatgatggctat 47342430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 559
Target Start/End: Complemental strand, 38521966 - 38521853
Alignment:
Q  445 attttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtacta 544  Q
    |||||||||||||||||| ||||  |||||||| ||| ||||||||||| || | |||| |||| ||  |||||||||||| | ||| || |||||| ||    
T  38521966 attttgttgaaatgtaattatattgaattatttatgaaacctatttaat-atatttttttaggtgctaggttggagaaaatcgatgcttattaagtatta 38521868  T
Q  545 ccgtaaaattagtga 559  Q
    || |||||| |||||    
T  38521867 ccataaaatgagtga 38521853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 489 - 526
Target Start/End: Original strand, 16883009 - 16883046
Alignment:
Q  489 ttaataatttcttttgaggtactgagttggagaaaatt 526  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  16883009 ttaataatttcttttgaggtactgagttgaagaaaatt 16883046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 531
Target Start/End: Original strand, 44543187 - 44543265
Alignment:
Q  453 gaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    ||||||| || ||||| ||||||| |||  ||||||||||||||||||||| || |  || |||||||||||| |||||    
T  44543187 gaaatgttattatatagaattattagtggaacctatttaataatttcttttaagatgttgggttggagaaaatcggtgc 44543265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 44542957 - 44542994
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatc 428  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  44542957 ctctctcttcattttttgtgggtcctatttaataaatc 44542994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 10046250 - 10046298
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaa 326  Q
    ||||||||||||||||||||  ||||| | ||||||| |||||||||||    
T  10046250 taagaccatccacaatggtgagtgcttcaactatttaacaccacattaa 10046298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 5e-70; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 276 - 562
Target Start/End: Original strand, 965226 - 965519
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagg 375  Q
    ||||||||||| ||||||| ||  || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||      
T  965226 tctaagaccattcacaatgatgagtgtttaacatatttagcaccacattaaataggcacccccattgtggagtaaaatatatgggtgtctatggagaata 965325  T
Q  376 atggctatagaagca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaa 471  Q
     || |||| ||||||    |||| ||||||| ||| || |||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  965326 gtgactatggaagcaccccctctgtcttcatttttcgtgggtcctatttaataaatcttaataaattaaataaattttgttgaaatgtaatgatataaaa 965425  T
Q  472 ttatttgtgagacctatttaata---atttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||||||  ||||||||||||   ||||||||||||||  || |||||||||||| ||||  || |||||| || |||||||||| ||||||    
T  965426 ttatttgtggaacctatttaataattatttcttttgaggtgttgggttggagaaaatgggtgtttattaagtattagcgtaaaattaatgatgt 965519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 278 - 562
Target Start/End: Complemental strand, 1706663 - 1706375
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||||  |||||||||| ||||| | |||||  |||||||||||||| |||||||||||| ||||||| |||| ||||||| ||| |||||| | |    
T  1706663 taagaccattaacaatggtgggtgcttcatctattcggcaccacattaaataggcacccccattatggagtataatacatgggtggctacggagaatggt 1706564  T
Q  378 ggctatagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatt 473  Q
    || ||| |||||||    ||||||||||| ||   | |||||||||||||||||  ||| | | ||||||||||||||||||||||||||||||||||||    
T  1706563 ggttatggaagcaccctctctctcttcattttccatgggtcctatttaataaatattaataaaataaataaattttgttgaaatgtaatgatataaaatt 1706464  T
Q  474 atttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||||| |||||||||||||||||||||| |||| |||  ||||||||||||| ||| || ||||||  || ||||||| ||||||||    
T  1706463 atttgtgggacctatttaataatttcttttaaggtgctggattggagaaaattgatgcttattaagtatgacggtaaaatgagtgatgt 1706375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 312 - 568
Target Start/End: Complemental strand, 41966331 - 41966073
Alignment:
Q  312 ttagcaccacatt-aaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcactctctcttcatatttt--g 408  Q
    ||||||||||||| |||| ||||||| ||||||| ||||||||| | |||||||||||||||||||||||||| ||||||| || | |   ||||||  |    
T  41966331 ttagcaccacatttaaataggcacccacattgtgaagtaaaataaacgggtgcctatggagaaggatggctatggaagcaccctatgtgtctattttatg 41966232  T
Q  409 ttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggt 508  Q
    ||||| |||||| ||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  41966231 ttggttctattttataaatcttaataaattaaataa-ttttgttgaaatgtaatgatataaaattatttatgagtcctatttaataatttcttttgaggt 41966133  T
Q  509 actgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaacac 568  Q
      || |||||||||||||| ||| || |||||| ||| ||||||||| | ||||| ||||    
T  41966132 gttgggttggagaaaattgatgcttattaagtattactgtaaaattaataatgtagacac 41966073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 303 - 531
Target Start/End: Complemental strand, 34519523 - 34519291
Alignment:
Q  303 ttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac----tctctct 398  Q
    ||||| |||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||| | ||||||| |||||||    |||||||    
T  34519523 ttaacgtatttagcaccacattaaataggcactcccattatggagtaaaatatttgggtgcctatggagaatggtggctatggaagcaccctctctctct 34519424  T
Q  399 tcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataattt 498  Q
    |||| |||     ||||||||||||||||| ||| | | || |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||    
T  34519423 tcatttttcacaagtcctatttaataaatcttaataaactatataaattttgttaaaatgtaatgatatagaattatttgtgggacctatttaataattt 34519324  T
Q  499 cttttgaggtactgagttggagaaaattggtgc 531  Q
    |||||||||| |||   ||||||||||||||||    
T  34519323 cttttgaggtgctggactggagaaaattggtgc 34519291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 280 - 562
Target Start/End: Original strand, 12287078 - 12287362
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||| ||||||||| ||||| ||||||||| ||||||||||||| |||||| ||||||||||||| || | ||| ||| ||||  |||||| |||    
T  12287078 agaccatcctcaatggtgggtgctttacctatttaacaccacattaaataggcacctccattgtggagtataagacatgagtgtctatcaagaagggtgg 12287177  T
Q  380 ctatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
    ||||  ||||||  ||||||||||| |||  | | ||  |||||||||||| ||| | | | ||||||||||||||||||||||||||||||||||||||    
T  12287178 ctatgaaagcaccctctctcttcatttttcatggatctcatttaataaatcttaataaaatgaataaattttgttgaaatgtaatgatataaaattattt 12287277  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||  ||| |||||||||||||||||| |||| |||  |||||||||||||||||  | |||||| ||| ||||||| ||||||||    
T  12287278 gttggacttatttaataatttcttttaaggtgctggattggagaaaattggtgctcattaagtattacggtaaaatgagtgatgt 12287362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 278 - 562
Target Start/End: Complemental strand, 35015992 - 35015704
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||| |||||||||||||| || || | ||||||||||||| ||||||| ||||||| |||||||||||| ||||||||| || |||| ||||| | |    
T  35015992 taagactatccacaatggtgggtgtttcatctatttagcaccatattaaataggcaccctcattgtggagtataatatatggatggctatagagaatggt 35015893  T
Q  378 ggctatagaagca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatt 473  Q
    |||||| ||||||    |||||||||||| |||| | ||||   ||||||||||| ||| | | ||||||||||||||||||||||||| |||||||||     
T  35015892 ggctatggaagcaccctctctctcttcattttttatgggtctcttttaataaatcttaataaaataaataaattttgttgaaatgtaattatataaaata 35015793  T
Q  474 atttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||  |  |||||||||| ||||||||||| ||||  || ||||||||||||  |||  || |||||| |||| |||||| ||||||||    
T  35015792 attcataggacctatttagtaatttcttttaaggtgatgggttggagaaaatgagtgtttattaagtattaccataaaataagtgatgt 35015704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 280 - 526
Target Start/End: Original strand, 1910963 - 1911211
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||||| |||||||| ||||| ||||||||||||| | ||||||| | |||||  |||||| |||| |||| ||||||| ||| ||||||   |||    
T  1910963 agaccatccataatggtgggtgcttcacctatttagcactatattaaatagacaccct-attgtgaagtataatacatgggtggctacggagaatagtgg 1911061  T
Q  380 ctatagaagcactctctct-tcatattttg--ttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatt 476  Q
    |||||||| ||| |||||| || ||||||   | ||||| | |||||||||| ||| | | |||||||||||||||||||| |||| |||||||||||||    
T  1911062 ctatagaatcaccctctctctcttatttttcatgggtcccagttaataaatcttaataaaataaataaattttgttgaaatataataatataaaattatt 1911161  T
Q  477 tgtgagacctatttaataatttcttttgaggtactgagttggagaaaatt 526  Q
    |||| || ||||||||||||||||||| ||||  | ||||||||||||||    
T  1911162 tgtgggatctatttaataatttcttttaaggtgttaagttggagaaaatt 1911211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 300 - 530
Target Start/End: Original strand, 27164155 - 27164384
Alignment:
Q  300 tgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac----tctc 395  Q
    ||||||||||||||| ||| ||||||||| |||||  ||||| |||||||||||||||| |||||||| ||||| | ||| ||| ||| |||    ||||    
T  27164155 tgcttaacctatttaacactacattaaataggcacatccattatggagtaaaatatatgagtgcctatagagaatggtggttatggaaacaccttctctc 27164254  T
Q  396 tcttcatatttt-gttggtc---ctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctattta 491  Q
    ||||| | |||| |||||||   |||||||||||||| |||         ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  27164255 tcttcttttttttgttggtcgtcctatttaataaatcataa---------taaattttgttgaaatgtaatgatatagaattatttgtaagacctattta 27164345  T
Q  492 ataatttcttttgaggtactgagttggagaaaattggtg 530  Q
     ||||||||||||||||  || |||||||||||||||||    
T  27164346 gtaatttcttttgaggtgttgggttggagaaaattggtg 27164384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 417 - 563
Target Start/End: Original strand, 6182608 - 6182754
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagtt 516  Q
    ||||||||| || ||| | | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||    
T  6182608 atttaataactcttaataaaataaataaatgttgttaaaatgtaatgatataaaattatttgtgagacctatttaataatttattttgaggtgctgggtt 6182707  T
Q  517 ggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    | |||||| |||||| || |||||| ||||||||||| || ||||||    
T  6182708 gaagaaaagtggtgcttattaagtattaccgtaaaatgagcgatgta 6182754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 278 - 531
Target Start/End: Original strand, 33037211 - 33037470
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    ||||| |||| ||||| |||| |||||  |||||||| ||||| |||||||   || |  |||||||||| | ||||||| |||| |||||||||||| |    
T  33037211 taagaacatctacaatcgtgggtgcttcgcctatttaacaccatattaaataaacatcatcattgtggagaataatatataggtggctatggagaagggt 33037310  T
Q  378 ggctatagaagcac------tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaa 471  Q
     | ||| |||||||      ||||||||||| |||  | | || ||||||||||||| ||| | | ||||||||  ||||| ||||||||||||||||||    
T  33037311 agatatggaagcaccatctctctctcttcatttttcatggatcgtatttaataaatcttaataaaataaataaacgttgttaaaatgtaatgatataaaa 33037410  T
Q  472 ttatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    |||||||||  |||||||||||||||| ||||||||| ||| ||||||||||| ||||||    
T  33037411 ttatttgtggaacctatttaataatttattttgaggtgctgggttggagaaaagtggtgc 33037470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 285 - 458
Target Start/End: Complemental strand, 16706763 - 16706585
Alignment:
Q  285 atccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctata 384  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||| ||||||| |||||||||| |    
T  16706763 atccacaatggtgggtgcttcacctatttagcaccacattaaataggca-ccccattgtggagtataacatatgggtgcttatggaggaggatggctaca 16706665  T
Q  385 gaagca----ctctctcttca--tattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatg 458  Q
     |||||    |||||||||||  | |||||||||||  |||||||||||| ||  | | | |||||||||||||||||||    
T  16706664 aaagcaccctctctctcttcattttttttgttggtctcatttaataaatcttagtaaaatgaataaattttgttgaaatg 16706585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 285 - 458
Target Start/End: Complemental strand, 17680999 - 17680821
Alignment:
Q  285 atccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctata 384  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||| ||||||| |||||||||| |    
T  17680999 atccacaatggtgggtgcttcacctatttagcaccacattaaataggca-ccccattgtggagtataacatatgggtgcttatggaggaggatggctaca 17680901  T
Q  385 gaagca----ctctctcttca--tattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatg 458  Q
     |||||    |||||||||||  | |||||||||||  |||||||||||| ||  | | | |||||||||||||||||||    
T  17680900 aaagcaccctctctctcttcattttttttgttggtctcatttaataaatcttagtaaaatgaataaattttgttgaaatg 17680821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 394 - 553
Target Start/End: Original strand, 1778747 - 1778905
Alignment:
Q  394 tctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaat 493  Q
    ||||||||| |||  | |||| ||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||  || | |||||||    
T  1778747 tctcttcatttttcatgggtcatatttaataaatcttaataaat-aaataaattttgttgaaatgtaatgatataaaattatttgtaggatcaatttaat 1778845  T
Q  494 aatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaat 553  Q
    |||||||||||||||  ||  ||||||||||||||||  || ||| || |||||||||||    
T  1778846 aatttcttttgaggtgttggattggagaaaattggtgtttattaaatattaccgtaaaat 1778905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 391 - 525
Target Start/End: Complemental strand, 29235653 - 29235519
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctattt 490  Q
    ||||||||||||||||  | | ||| |||||||||||| ||| | | |||||||||||| ||||||||||||||||||||||||||| |  || ||||||    
T  29235653 ctctctcttcatatttcatggatcccatttaataaatcttaataaaataaataaattttattgaaatgtaatgatataaaattatttataggatctattt 29235554  T
Q  491 aataatttcttttgaggtactgagttggagaaaat 525  Q
    ||||||||||||||| || ||| ||||||||||||    
T  29235553 aataatttcttttgaagtgctgggttggagaaaat 29235519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 438 - 546
Target Start/End: Complemental strand, 2485234 - 2485126
Alignment:
Q  438 taaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagta 537  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||||||||||||  |||| || ||    
T  2485234 taaataaattttattgaaatttaatgatataaaattatttgtgagacatatttaataattttttttgaggtgttgagttggagaaaatctgtgcatatta 2485135  T
Q  538 agtactacc 546  Q
    |||| ||||    
T  2485134 agtattacc 2485126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 508
Target Start/End: Complemental strand, 26576103 - 26576012
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggt 508  Q
    ||||||||| || ||| | | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  26576103 atttaataattcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttatgagatctatttaataatttcttttaaggt 26576012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 436 - 526
Target Start/End: Complemental strand, 4905191 - 4905101
Alignment:
Q  436 attaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaatt 526  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||| | |||  ||||||||||||    
T  4905191 attaaataaattttgttgaaatgtaataatataaatttatttgtgggacctatttaataatttctcttgagatgctggattggagaaaatt 4905101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 303 - 563
Target Start/End: Original strand, 22527990 - 22528259
Alignment:
Q  303 ttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac----tctctct 398  Q
    |||||||||| || |||||||||||| | ||| || |||||| |||| |||||| ||||||||||||||| || ||| ||| |||||||    |||||||    
T  22527990 ttaacctattcagaaccacattaaatagacactccaattgtgaagtataatatacgggtgcctatggagaggggtggatatggaagcaccctctctctct 22528089  T
Q  399 tcatattttgtt---ggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataa 495  Q
    ||  ||||| |    | ||| ||| |||||||| ||| | ||||||||||||||||||||||| ||||||||| |||| |||  | ||||| ||||||||    
T  22528090 tctaattttttcacggatccgattgaataaatcttaataaattaaataaattttgttgaaatgaaatgatatataattcttt-agggacctgtttaataa 22528188  T
Q  496 tttcttttgaggtactgagttggag---aaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    |||| ||| |||| ||| |||||||   |||||| |||| || |||||| ||||| |||| || |||||||    
T  22528189 tttcgtttaaggtgctgtgttggagataaaaattagtgcttattaagtattaccgaaaaaataatgatgta 22528259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 278 - 383
Target Start/End: Original strand, 6182482 - 6182589
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacat--taaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagg 375  Q
    ||||||| |||||||| ||||||| || ||||||||||||||| ||  ||||| |||||||| ||||||||| | |||||||||||||||||| |||| |    
T  6182482 taagaccgtccacaatagtggatgtttcacctatttagcaccatatattaaataggcacccctattgtggagaataatatatgggtgcctatgaagaatg 6182581  T
Q  376 atggctat 383  Q
     |||||||    
T  6182582 gtggctat 6182589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 470 - 561
Target Start/End: Complemental strand, 4163352 - 4163261
Alignment:
Q  470 aattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatg 561  Q
    ||||||||||| ||||||||||||||||||||||  ||| ||| ||| |||||||||||||| ||||||||| ||  ||||||| |||||||    
T  4163352 aattatttgtgggacctatttaataatttcttttatggtgctgggttagagaaaattggtgcttagtaagtattattgtaaaataagtgatg 4163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 35016150 - 35016074
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaata 354  Q
    |||||| |||||||||||||| ||||| | ||||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  35016150 taagactatccacaatggtgggtgcttcatctatttagcaccatattaaataggcaccctcattgtggagtataata 35016074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Complemental strand, 18273545 - 18273474
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggag 347  Q
    |||||||| |||||||||||||||||||| ||||||||||||||| | |||||   ||||||||||||||||    
T  18273545 tctaagactatccacaatggtggatgcttcacctatttagcaccataataaataaacacccccattgtggag 18273474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 398
Target Start/End: Complemental strand, 4167407 - 4167292
Alignment:
Q  283 ccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggcta 382  Q
    ||||||||||| |||  || || ||||||||||||||| ||||||| | ||||| |||| ||||||| ||||| || |||  ||||||||||  || |||    
T  4167407 ccatccacaatagtgtgtgtttcacctatttagcaccatattaaatagacaccctcattatggagtataatatttgagtgattatggagaagagtgacta 4167308  T
Q  383 tagaagcactctctct 398  Q
    | ||||||||||||||    
T  4167307 tggaagcactctctct 4167292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 41853417 - 41853366
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatggg 331  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||||||||    
T  41853417 agaccatccacaatgatggatgcttcatctatttagcaccacattaaatggg 41853366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 47066184 - 47066134
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaat 328  Q
    ||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  47066184 taagaccattcataatggtggatgcttaacctatttaacaccacattaaat 47066134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 398
Target Start/End: Original strand, 27743809 - 27743927
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||| || || |  |||||||||| |||||||||  ||| ||  ||||| ||||| || |||| |||| ||||||| |||| |||    
T  27743809 agaccatccacaatggtgggtgtttcatgtatttagcactacattaaataagcaaccttattgtagagtataacatataggtgtctatggaaaagggtgg 27743908  T
Q  380 ctatagaagcactctctct 398  Q
     || |||||| ||||||||    
T  27743909 atacagaagcgctctctct 27743927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 41966553 - 41966511
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcacca 320  Q
    |||||||||| |||||||||||||||||| |||||||||||||    
T  41966553 taagaccatctacaatggtggatgcttaatctatttagcacca 41966511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 450
Target Start/End: Complemental strand, 47066132 - 47066021
Alignment:
Q  343 tggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatatt 438  Q
    |||| ||||| ||||| ||| |||||||||||  || |||| |||||||    ||| ||||||| ||| || || ||||||||||||||| ||| | |||    
T  47066132 tggaataaaaaatatgagtgtctatggagaagagtgtctatggaagcaccatctctatcttcatttttcgtgggacctatttaataaatcttaataaatt 47066033  T
Q  439 aaataaattttg 450  Q
    ||||||||||||    
T  47066032 aaataaattttg 47066021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 428
Target Start/End: Complemental strand, 25734724 - 25734619
Alignment:
Q  323 ttaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcactctctcttcatattttgttggtcctatttaa 422  Q
    |||||| | |||| |||||||| |||| || ||||| |||| | || || ||| ||||||| |||||||||||||||||| |||  | | ||| ||||||    
T  25734724 ttaaatagacacctccattgtgaagtataacatatgtgtgcttttgaaggagggtggctatggaagcactctctcttcatttttcatggatcccatttaa 25734625  T
Q  423 taaatc 428  Q
    ||||||    
T  25734624 taaatc 25734619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 562
Target Start/End: Complemental strand, 32689592 - 32689516
Alignment:
Q  486 tatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||| |||||| ||||| ||| |||  ||| | ||||||||||| |||||||||||| | |||||| ||||||||    
T  32689592 tatttagtaattttttttgcggtgctggattgaaaaaaattggtgcttagtaagtactatcataaaatgagtgatgt 32689516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 280 - 562
Target Start/End: Original strand, 32183773 - 32184059
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||| ||||| | |||||||||| || ||||||| |||||||||||||||||||| |||||||||||| |||||||||| | |||    
T  32183773 agaccatccacaatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggagtataatatatgggtggctatggagaacggtgg 32183872  T
Q  380 ctatagaagcactctctctt----catattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattat 475  Q
    |||| ||||||| |||||||    ||| |||  | ||||  |||||||||||| ||| | | ||||||| ||||||||||||||||||||||||||||||    
T  32183873 ctatggaagcaccctctctttcttcatttttcatgggtcacatttaataaatcttaataaaataaataatttttgttgaaatgtaatgatataaaattat 32183972  T
Q  476 ttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||  ||| |||||||||||||||||||||||  || |||||||||||||||||  || |||||| ||||||||||| ||||||||    
T  32183973 ttgtaggacttatttaataatttcttttgaggtgttgggttggagaaaattggtgtttattaagtattaccgtaaaataagtgatgt 32184059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 280 - 568
Target Start/End: Original strand, 521161 - 521454
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||||| ||| ||||| |||||| |||    
T  521161 agaccatccacaatggtgcatgcttaacctatttagcaccacattaaataagcatctccattgtggagtaaaatatatgagtgtctatgaagaagggtgg 521260  T
Q  380 ctatagaagca----ctctctcttcatattttg-ttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatta 474  Q
    || | ||||||    ||||||||| || ||||  |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||    
T  521261 ctttggaagcatcctctctctctttatttttttcttggtcctatttaataaatcttaataaattaaataaattttgttgaaatgtaatgatatataatta 521360  T
Q  475 tttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaacac 568  Q
    |||||| || |||||||||||||||||||||||| |||  || |||||||||| ||  || | |||  ||| |||| |||| ||||||||||||    
T  521361 tttgtgggatctatttaataatttcttttgaggtgctggattagagaaaattgatgtttactgagtgttacagtaatattaatgatgtaaacac 521454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 280 - 560
Target Start/End: Original strand, 13185447 - 13185730
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||||||||||||||| || ||||||| |||||||| |||||||| ||||  || ||||||||||||||||||||||||||  ||||||||| ||     
T  13185447 agaccatccacaatggtggaagcataacctacttagcaccgcattaaataggca-tcctattgtggagtaaaatatatgggtgccattggagaagggtga 13185545  T
Q  380 ctatagaag----cactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattat 475  Q
    |||| ||||    | || ||||||||| ||| || || ||||||||||||||| ||| | |||| |||||||||||||||| ||||||||| | ||||||    
T  13185546 ctatggaagaaccctctatctcttcatttttcgtgggacctatttaataaatcttaataaattatataaattttgttgaaacgtaatgatagagaattat 13185645  T
Q  476 ttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgat 560  Q
    ||||| ||| ||||||||||||||||||||| | ||| |||||||||||||||||| || |||||| ||||||||| ||| ||||    
T  13185646 ttgtgggacttatttaataatttcttttgagctgctgggttggagaaaattggtgcttattaagtattaccgtaaagttaatgat 13185730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 306 - 551
Target Start/End: Original strand, 15489400 - 15489645
Alignment:
Q  306 acctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcactctctcttcatatt 405  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||   ||||||| ||||||| |||||| ||| ||    
T  15489400 acctatttagcaccacattaaataggcacccccattgtggagtataatatttgggtgtctatggagaaaagtggctatggaagcaccctctctccatttt 15489499  T
Q  406 ttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttga 505  Q
    |||  ||||  |||||||||||| ||| ||| |||| |||||| ||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||    
T  15489500 ttgcgggtctcatttaataaatcttaatataataaagaaatttcgttgaaatgtaattacatataattatttgtgggacctatttaataatttcttttga 15489599  T
Q  506 ggtactgagttggagaaaattggtgcctagtaagtactaccgtaaa 551  Q
     ||  || |||||||||||||||||| || |||||| || ||||||    
T  15489600 tgtgttgggttggagaaaattggtgcttattaagtattatcgtaaa 15489645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 280 - 562
Target Start/End: Complemental strand, 15135140 - 15134849
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcaccc-ccattgtggagtaaaatatatgggtgcctatggagaaggatg 378  Q
    |||||||| ||||||| || | ||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||||| |||||||||||| ||    
T  15135140 agaccatcaacaatggagggtacttcacctatttagcaccacattaaataggcaccctccattgtggagtataatacatgggtggctatggagaagggtg 15135041  T
Q  379 gctatagaagcactctctct--------tcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaa 470  Q
    ||||| ||||||| ||||||        |||| |||  | ||||  |||||||||||| ||| | | |||||||||||||||||||||||||||||||||    
T  15135040 gctatggaagcaccctctctctttctcttcatttttcatgggtctcatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaa 15134941  T
Q  471 attatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||||||||  | ||||||||||||||||||| |||||||  |||||||||||||||||  || |||||| ||| ||||||| ||| ||||    
T  15134940 attatttgtggaatctatttaataatttcttttaaggtactaggttggagaaaattggtgtttattaagtattacagtaaaatgagtaatgt 15134849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 563
Target Start/End: Complemental strand, 20969863 - 20969575
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||||| | ||||||||||||||| |||| || |||||||||  ||||||| ||| |||    
T  20969863 agaccatccacaatggtgggtacttcacctatttagcaccacattaagtaggcacccccattgtgaagtataacatatgggtgtttatggaggagggtgg 20969764  T
Q  380 ctatagaagca----ctctctcttcatattttgttgg-tcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaatt 473  Q
    ||||  || ||    ||||||||| | |||||  ||| ||| |||||||||||| ||  | | | ||||||||||||| ||| |||||||||||||||||    
T  20969763 ctatgaaaacatcatctctctcttta-attttcatggatcccatttaataaatcttagtaaaatgaataaattttgttaaaaatgtaatgatataaaatt 20969665  T
Q  474 atttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgta 563  Q
    ||| ||| |||||||||||||||||||||| |||| ||  |||||||||||||||||| ||  ||||| ||||||||||||  |||||||    
T  20969664 attggtgggacctatttaataatttcttttcaggtgctaggttggagaaaattggtgcttatgaagtagtaccgtaaaattgatgatgta 20969575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 391 - 562
Target Start/End: Original strand, 22747069 - 22747240
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctattt 490  Q
    |||||||||||| |||  | ||||  |||||||||||  ||| | | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  22747069 ctctctcttcatttttcatgggtcacatttaataaatattaataaaataaataaaatttgttgaaatgtaatgatataaaattatttgtaagacctattt 22747168  T
Q  491 aataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||||||||||||||||||| ||||||||||||||  || || |||||| ||||||||||| ||||||||    
T  22747169 aataatttcttttgaggtactgggttggagaaaattgacgcttattaagtattaccgtaaaatgagtgatgt 22747240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 284 - 495
Target Start/End: Original strand, 15611479 - 15611695
Alignment:
Q  284 catccacaatggtggatgcttaacctatttagcac---cacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggc 380  Q
    |||||| ||| |||||||||||| ||||||| |||   ||||||||||   || ||  |||||||||||||||| |||| || || ||||||| | || |    
T  15611479 catccataatagtggatgcttaatctatttaacactaccacattaaataaacatccttattgtggagtaaaatacatggttgtctgtggagaaaggtgac 15611578  T
Q  381 tatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttg 478  Q
    ||| |||||||  |||||||| || |||| |||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||     
T  15611579 tatggaagcacactctctctttattttttattggtcctatataataaatcttaataaattaaataaattttgttgaaatgtaatgatataaaattattta 15611678  T
Q  479 tgagacctatttaataa 495  Q
    || ||||||||||||||    
T  15611679 tgggacctatttaataa 15611695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 270 - 567
Target Start/End: Original strand, 21208140 - 21208438
Alignment:
Q  270 aaaggttctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatgg 369  Q
    ||||||||||||| | ||||||||||||  ||||| ||||||||| ||||  ||||||| |||||||  ||||||||| | |||||||||||| ||||||    
T  21208140 aaaggttctaagatcgtccacaatggtgtgtgcttcacctatttaacaccgtattaaataggcacccttattgtggagaataatatatgggtggctatgg 21208239  T
Q  370 agaaggatggctatagaagca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgat 465  Q
    |||||  ||||||| ||||||    |||| ||||||| |||  | ||||  ||| |||||||| ||| | | ||||||||   || | |||| |||||||    
T  21208240 agaagagtggctatggaagcaccctctctttcttcatttttcatgggtctcattaaataaatcttaataaaataaataaa---tgataaaatataatgat 21208336  T
Q  466 ataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaa 565  Q
    ||||||||||||||  |||| ||||| |||||| |||| ||||  || ||||||||||| |||||| || ||| || |||||||| || |||||||| ||    
T  21208337 ataaaattatttgtatgaccaatttagtaatttattttaaggtgttgggttggagaaaagtggtgcttattaattattaccgtaacataagtgatgtgaa 21208436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 448 - 562
Target Start/End: Original strand, 5188237 - 5188351
Alignment:
Q  448 ttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccg 547  Q
    ||||||||||||||||||||||||||  |||||  | ||||||||||||||||||||| || |||  ||| ||||||||||||| || ||| || ||||     
T  5188237 ttgttgaaatgtaatgatataaaatttattgtggaaactatttaataatttcttttgaagtgctggattgaagaaaattggtgcttattaaatattacca 5188336  T
Q  548 taaaattagtgatgt 562  Q
    |||||| ||||||||    
T  5188337 taaaataagtgatgt 5188351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 276 - 527
Target Start/End: Complemental strand, 3611296 - 3611047
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagg 375  Q
    ||||||| |||||||||||  ||||| || ||||||||||||||||| |||||   ||||   |||| |||||| |||||||| ||||||||| |||||     
T  3611296 tctaagatcatccacaatgaaggatgtttcacctatttagcaccacactaaataaacaccattattgaggagtataatatatgtgtgcctatgaagaaga 3611197  T
Q  376 atggctatagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaa 471  Q
     ||| |||  || |||    ||||||||||| |||   |||||  |||||||||||| ||| |    ||| |||||  ||| |||| ||||||| |||||    
T  3611196 gtggttatgaaaacaccctctctctcttcatttttcactggtctcatttaataaatcttaata----aaaaaaatt--gttcaaatataatgatgtaaaa 3611103  T
Q  472 ttatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattg 527  Q
    |||||||| |||| |||||||||||||||||||| ||  || |||||| |||||||    
T  3611102 ttatttgtaagacttatttaataatttcttttgaagtgttgggttggaaaaaattg 3611047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 446 - 551
Target Start/End: Complemental strand, 1040485 - 1040380
Alignment:
Q  446 ttttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactac 545  Q
    |||| ||||||||| |||||||| |||||||| || ||| ||||||||||||| |||||||||  ||||||||||||||| | ||  || |||||| |||    
T  1040485 tttttttgaaatgtgatgatatagaattatttatgggacatatttaataatttattttgaggtgttgagttggagaaaatggatgattattaagtattac 1040386  T
Q  546 cgtaaa 551  Q
    ||||||    
T  1040385 cgtaaa 1040380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 306 - 479
Target Start/End: Original strand, 2912704 - 2912882
Alignment:
Q  306 acctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagca----ctctctcttca 401  Q
    |||||||||| |||||||||||| |||||| ||||||||||||  || ||||| ||||  |||||| ||| ||||||| ||||||    |||||||||||    
T  2912704 acctatttagaaccacattaaataggcacctccattgtggagtgtaacatatgagtgctaatggaggagggtggctatggaagcaacctctctctcttca 2912803  T
Q  402 tattttgttggtcctatttaataaatcctaaaatattaaataaattttgtt-gaaatgtaatgatataaaattatttgt 479  Q
    | |||  | ||||  |||||||||||| ||  | | | ||||||||||||| ||||| |||||||||| | ||||||||    
T  2912804 tttttaatgggtctcatttaataaatcttagtaaaatgaataaattttgttagaaatataatgatatagagttatttgt 2912882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 6838072 - 6837967
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||| ||||||| |||| ||||| |||||||||||| || ||||||| |||||| | ||||| ||||| || ||||| |||| ||||||| ||| |    
T  6838072 taagaccacccacaatcgtgggtgcttcacctatttagcatcatattaaataggcaccactattgtagagtataacatatgagtgcttatggaggagggt 6837973  T
Q  378 ggctat 383  Q
    ||||||    
T  6837972 ggctat 6837967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 498
Target Start/End: Original strand, 9908390 - 9908442
Alignment:
Q  446 ttttgttgaaatgtaatgatataaaattatttgtgagacctatttaataattt 498  Q
    ||||||||||||||| | || |||||||||| |||||||| ||||||||||||    
T  9908390 ttttgttgaaatgtattaatgtaaaattattagtgagacccatttaataattt 9908442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 554
Target Start/End: Complemental strand, 6837944 - 6837781
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaattatttgtgagacctatt 489  Q
    |||||||||||| |||  | ||||  |||||||||||| ||  | | | ||||||||||||| ||| |||||||||||| | ||||| ||| | |||  |    
T  6837944 ctctctcttcatttttcatgggtctcatttaataaatcttagtaaaatgaataaattttgttaaaaatgtaatgatatagagttattggtggggcctggt 6837845  T
Q  490 taataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaatt 554  Q
    |||||||| |||||||||| ||  ||||| |||||||| ||| || |||||| ||  ||||||||    
T  6837844 taataatt-cttttgaggtgctaggttggtgaaaattgatgcttattaagtattaaagtaaaatt 6837781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 604
Target Start/End: Complemental strand, 20877530 - 20877502
Alignment:
Q  576 ctatctttatctttattatatacatttgc 604  Q
    |||||||||||||||||||||||||||||    
T  20877530 ctatctttatctttattatatacatttgc 20877502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 7e-66; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 280 - 568
Target Start/End: Original strand, 29700950 - 29701240
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||||| |||||||| ||||||||||||||||||| | ||||||| |||||||||| ||||||| ||||||||||||||  ||||||||||| |||    
T  29700950 agaccatccagaatggtgggtgcttaacctatttagcacaatattaaataggcacccccactgtggagcaaaatatatgggtgtatatggagaagggtgg 29701049  T
Q  380 ctatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
    ||||  ||| ||  ||||||||||| ||||||||||| |||||||| | || ||| |  |||||||||||||||||||||||| ||||||| | ||||||    
T  29701050 ctatgaaagtaccctctctcttcattttttgttggtcatatttaatgagtcttaataatttaaataaattttgttgaaatgtagtgatatatatttattt 29701149  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaacac 568  Q
     || |||||| ||||||||||||||| || | ||| |||||||||||||||||  || |||||| ||||| ||||||| ||||||| ||||    
T  29701150 ctgggacctagttaataatttcttttaagatgctgggttggagaaaattggtgtttattaagtattaccgaaaaattaatgatgtagacac 29701240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 281 - 527
Target Start/End: Original strand, 33016375 - 33016621
Alignment:
Q  281 gaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaa-ggatgg 379  Q
    ||||||| |||||||| | |||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| ||||||||| ||||||    
T  33016375 gaccatctacaatggtaggtgcttaacttatttagcaccacattaaataggcacctccattttggagtaaaatatatgggtgcttatggagaaaggatgg 33016474  T
Q  380 ctatagaagcactctctcttcatatt-ttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttg 478  Q
      |   |  | |||||||||||| || ||||||||||||||||||||||| ||  | ||||||||||||||||||||||  |||||||||||||||||||    
T  33016475 --aagcaccctctctctcttcattttgttgttggtcctatttaataaatcttagtaaattaaataaattttgttgaaattcaatgatataaaattatttg 33016572  T
Q  479 tgagacctatttaataatttcttttgaggtactgagttggagaaaattg 527  Q
    ||  ||||||||||||||||||||||||||  || ||||||||||||||    
T  33016573 tggaacctatttaataatttcttttgaggtgttgggttggagaaaattg 33016621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 280 - 567
Target Start/End: Complemental strand, 8259569 - 8259278
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||| |||||||||| ||||| | |||||||||| || ||||||| |||||||||||||||| ||| |||||||||||| |||||||||||| |||    
T  8259569 agaccatctacaatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggggtataatatatgggtggctatggagaagggtgg 8259470  T
Q  380 ctatagaagcactctctc----ttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattat 475  Q
     ||| ||||||| |||||    ||||| |||  | ||||  |||||||||||  ||| | | |||||||||||||||||||||||||||||||||| |||    
T  8259469 ttatggaagcaccctctccctcttcatttttcatgggtcacatttaataaattttaataaaataaataaattttgttgaaatgtaatgatataaaaatat 8259370  T
Q  476 ttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgtaaaca 567  Q
    |||| | |||||||| ||||||||||||||||| |||  ||| ||||||||  |    | |||||| ||| ||||||| |||||||||||||    
T  8259369 ttgtaaaacctatttgataatttcttttgaggtgctggattgtagaaaattaattttgattaagtattactgtaaaatgagtgatgtaaaca 8259278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 278 - 562
Target Start/End: Complemental strand, 20381324 - 20381054
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||||||| ||||| |||||||||||||| |||| ||||||| |||||||           
T  20381324 taagaccaaccacaatggtggatgtttcacctatttagcaccatattaaataggcactcccattgtggagtataatacatgggtggctatgga------- 20381232  T
Q  378 ggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
          || | | |||||||||||| |||  | ||| | |||||| ||||| ||| | | ||||||||||||||||||||||||||||||||||||||||    
T  20381231 ------agcacc-ctctctcttcatttttcatgggttccatttaaaaaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattattt 20381139  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||| | |||||||||||||| ||||| |||| ||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||    
T  20381138 gtgggccctatttaataattccttttaaggtgctgggttggagaaaattgatgcttattaagtattacggtaaaatgagtgatgt 20381054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 285 - 544
Target Start/End: Complemental strand, 12140995 - 12140734
Alignment:
Q  285 atccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctata 384  Q
    |||||||||||||| || || ||||||||| ||| | ||| ||| |||| ||  ||||||||||| ||||| || |||||| | ||||||| |||||||     
T  12140995 atccacaatggtgggtgtttcacctatttaacactatatttaataggcatccttattgtggagtataatatttgtgtgcctgtcgagaagggtggctatg 12140896  T
Q  385 gaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattt-tgttgaaatgtaatgatataaaattatttgtga 481  Q
    ||| |||  ||||||||||  |||||| |  ||||||||||||||| |||   ||||||||||||| | |||||||||||||||||||| |||||||||     
T  12140895 gaaccaccctctctcttcaccttttgtggaccctatttaataaatcataatgaattaaataaatttatattgaaatgtaatgatataaa-ttatttgtgg 12140797  T
Q  482 gacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtacta 544  Q
    ||| |||||| |||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  12140796 gacttatttagtaatttcttttgtggtactaggttggagaaaattggtgcctagtaagtacta 12140734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 306 - 553
Target Start/End: Complemental strand, 16255538 - 16255288
Alignment:
Q  306 acctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcactctct----cttca 401  Q
    |||||||||||||||||||||||   ||||| |||| || |||| |||||||||||||||||| |||||  ||||||| ||||||| ||||    |||||    
T  16255538 acctatttagcaccacattaaataa-caccctcattatgaagtataatatatgggtgcctatgtagaagagtggctatggaagcaccctctttctcttca 16255440  T
Q  402 tattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttctt 501  Q
      |||     |||| |||||||||||| ||| | | ||||||||||||||||||||| ||||||||| |||||||||||||||  |||||||||||||||    
T  16255439 attttcacaagtcccatttaataaatcttaataaaataaataaattttgttgaaatggaatgatatagaattatttgtgagacaaatttaataatttctt 16255340  T
Q  502 ttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaat 553  Q
    ||||||| ||| |||||||||||||| ||| || |||||| |||||||||||    
T  16255339 ttgaggtgctgggttggagaaaattgatgcttattaagtattaccgtaaaat 16255288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 331 - 562
Target Start/End: Complemental strand, 50378359 - 50378124
Alignment:
Q  331 gcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcactctc----tcttcatattttgttggtcctatttaataaa 426  Q
    ||||||||||| | ||||  |||||||||||  |||||||||||| ||||||| ||||||| |||    ||||||| |||  | |||| |||||||||||    
T  50378359 gcacccccatttttgagtttaatatatgggtagctatggagaagggtggctatggaagcaccctcactctcttcatttttcatgggtcatatttaataaa 50378260  T
Q  427 tcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaatt 526  Q
    |  ||| | | |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||| |||  ||||||||||||    
T  50378259 tattaataaaataaataaattttgttgaaatgtaatgatataaaattatttataggacctatttaataatttcttttgaggtgctggattggagaaaatt 50378160  T
Q  527 ggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||| || |||||  ||||||| ||| ||||||||    
T  50378159 ggtgcttattaagtgttaccgtacaatgagtgatgt 50378124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 322 - 562
Target Start/End: Complemental strand, 50377992 - 50377749
Alignment:
Q  322 attaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcactctctct--tcatattttgttggtcctatt 419  Q
    ||||||| | |||| ||||||| ||||| ||||||||||||||||||||| ||| ||| ||| ||||||||||||||  | || |||||  ||| | |||    
T  50377992 attaaatagacacctccattgtagagtataatatatgggtgcctatggaggagggtggttatggaagcactctctctctttattttttgcgggttccatt 50377893  T
Q  420 taataaatcctaaaatattaaataaattttgttgaaatgtaa-tgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttgg 518  Q
    ||||||||| ||| | | |||| ||||||| |||||| |||| ||||||| || |||||||| ||||||||||||||||||||||||||| ||| |||||    
T  50377892 taataaatcttaataaagtaaagaaattttattgaaaggtaaatgatatagaactatttgtgggacctatttaataatttcttttgaggtgctgggttgg 50377793  T
Q  519 agaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||||||||| | || |||||| |||||||||||  |||||||    
T  50377792 agaaaattggtacttattaagtattaccgtaaaatgggtgatgt 50377749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 308 - 562
Target Start/End: Complemental strand, 24120430 - 24120172
Alignment:
Q  308 ctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac----tctctcttcata 403  Q
    ||||||||||||||||||||| || ||||||||||||||| | ||| |||||| | |||||||||| |||||||||  ||||||    |||||||||||     
T  24120430 ctatttagcaccacattaaataggaacccccattgtggagaataatgtatgggcggctatggagaaagatggctatgaaagcaccatctctctcttcatt 24120331  T
Q  404 ttttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttctttt 503  Q
    |||  | ||||| | |||||||||| ||| | | ||||||||| ||||| |||||||||||||||||||||| |||  || |||||||| ||||| ||||    
T  24120330 tttcttgggtcccagttaataaatcttaataaaataaataaatgttgttaaaatgtaatgatataaaattatctgtaggatctatttaaaaatttatttt 24120231  T
Q  504 gaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||| |  |||||||||||||| || | | || |||||| ||||||||||| | ||||||    
T  24120230 gagatgttgagttggagaaaagtgatacttattaagtattaccgtaaaatgaatgatgt 24120172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 562
Target Start/End: Original strand, 39923245 - 39923520
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||| ||||||| || ||| ||||||||| ||| |||| ||||| | |||    
T  39923245 agaccatccacaatgatgggtgcttaacctatttaacaccgcattaaatgggca-ccccattatgaagt-aaatatatgagtgtctatagagaatggtgg 39923342  T
Q  380 ctatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
     | ||||| |||  |||||||  || |||||  ||| | |||||||||||| ||| | |||||||||||||||||||||||||   ||||  ||||||||    
T  39923343 ttgtagaaacaccttctctctcaattttttgcaggttcaatttaataaatcttaataaattaaataaattttgttgaaatgta---atatgtaattattt 39923439  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
        || ||||||||||||||||||||||||  || ||| ||||||||||||   || |||||| ||||||||||||| ||||||    
T  39923440 ----gagctatttaataatttcttttgaggtgttgggtttgagaaaattggtatttattaagtattaccgtaaaattaatgatgt 39923520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 417 - 560
Target Start/End: Complemental strand, 32714237 - 32714096
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagtt 516  Q
    ||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||  || |||    
T  32714237 atttaatgaatcttaataaattaaataaattttgttgaaatgtaatgatataaaattatttgtaggacttatttaataatttcttttgaggtgatgggtt 32714138  T
Q  517 ggagaaaattggtgcctagtaagtactaccgtaaaattagtgat 560  Q
    ||||||||||||||| ||   |||| ||||||||||| ||||||    
T  32714137 ggagaaaattggtgctta--tagtattaccgtaaaatgagtgat 32714096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 278 - 554
Target Start/End: Original strand, 51776541 - 51776820
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||||||| |||||||| || || ||||||||||||||||||||||| |||| ||| ||| || |||| || |||||| ||| ||||||| | | |    
T  51776541 taagaccatccataatggtgggtgtttcacctatttagcaccacattaaataggcaaccctattatgaagtataacatatggatgcttatggaggatggt 51776640  T
Q  378 ggctatagaagcac--tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaatta 474  Q
    |||||| ||| |||  ||||||||||  |||  | ||||  |||||||||||| ||  | | | ||||||||| ||| ||| ||||||| |||| | |||    
T  51776641 ggctatggaaacaccctctctcttcaattttcatgggtcacatttaataaatcttagtaaaatgaataaatttcgttaaaaatgtaatggtatagagtta 51776740  T
Q  475 tttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaatt 554  Q
    ||| || | |||| ||||||||||||||||||||  || |||||||||||||| ||| ||  ||||| ||||||||||||    
T  51776741 tttatgcggcctagttaataatttcttttgaggtgttgggttggagaaaattgatgcttatcaagtattaccgtaaaatt 51776820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 275 - 562
Target Start/End: Complemental strand, 15342962 - 15342690
Alignment:
Q  275 ttctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaag 374  Q
    |||| ||| |||| |||||||||| ||||| |||||||||||||||||||||||  ||||||| ||||||||||| |||| ||||||| |||||||        
T  15342962 ttcttagatcatctacaatggtgggtgcttcacctatttagcaccacattaaataagcacccc-attgtggagtataatacatgggtggctatgga---- 15342868  T
Q  375 gatggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatta 474  Q
             || | | |||||||||||| |||  | || |  |||||||||||  ||| | | |||||||||||||||||||| ||||||||||||||||    
T  15342867 ---------agca-ctctctctcttcatttttcatgggccacatttaataaattttaataaaataaataaattttgttgaaatataatgatataaaatta 15342778  T
Q  475 tttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||  ||||||||||||||||| |||| | || ||| |||| ||||||||||||  || ||| || ||| ||||||| ||||||||    
T  15342777 tttgtaggacctatttaataatttattttaaagtgctgggttgaagaaaattggtgtttattaaatattacagtaaaatgagtgatgt 15342690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 353 - 479
Target Start/End: Complemental strand, 18236556 - 18236431
Alignment:
Q  353 tatatgggtgcctatggagaaggatggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgtt 452  Q
    ||||||| |||||||| |||||| ||||||| ||||| |||||||||||| |||||| |||| ||||||||||||| ||| | |||||||||| ||||||    
T  18236556 tatatggatgcctatgaagaagggtggctatggaagcgctctctcttcattttttgtcggtcatatttaataaatcttaataaattaaataaa-tttgtt 18236458  T
Q  453 gaaatgtaatgatataaaattatttgt 479  Q
    |||| ||||||||||| ||||||||||    
T  18236457 gaaaagtaatgatatagaattatttgt 18236431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 394 - 562
Target Start/End: Complemental strand, 5959357 - 5959190
Alignment:
Q  394 tctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaat 493  Q
    ||||||||| |||||  |||||||||||||||||| ||| | | ||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||    
T  5959357 tctcttcattttttgcgggtcctatttaataaatcttaataaaataaataaattttgttgaaatgtaacaatataaaattatttgtaggacctatttaat 5959258  T
Q  494 aatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||  ||||||    ||  ||||||||||| | ||| || |||||| ||||||||||||||| ||||    
T  5959257 aatttactttgagacgttggattggagaaaatcgatgctta-taagtattaccgtaaaattagttatgt 5959190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 411 - 562
Target Start/End: Complemental strand, 25389054 - 25388903
Alignment:
Q  411 ggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtac 510  Q
    |||||||||||||||||  ||| | | |||||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||||||||| ||||      
T  25389054 ggtcctatttaataaattttaataaaataaataaattttgttgaaatgtaatgatataaaattatttataggacctatttagtaatttcttttaaggtgt 25388955  T
Q  511 tgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    || |||||| ||||||| ||| || |||||| |||  |||||| | ||||||    
T  25388954 tgggttggaaaaaattgatgcttattaagtattacgataaaatgaatgatgt 25388903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 285 - 398
Target Start/End: Original strand, 47024310 - 47024423
Alignment:
Q  285 atccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctata 384  Q
    |||||||||||||| ||| ||| ||||||  ||||||||||||| |||||| ||||||||||||||||||||||| ||||||| ||||| | ||||||||    
T  47024310 atccacaatggtgggtgcgtaatctatttcacaccacattaaataggcacctccattgtggagtaaaatatatggatgcctatagagaaaggtggctata 47024409  T
Q  385 gaagcactctctct 398  Q
    ||| ||| ||||||    
T  47024410 gaaacaccctctct 47024423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 561
Target Start/End: Complemental strand, 42693603 - 42693308
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||||||| ||||||| || ||| |  |||||||||||| ||||||| |||||| ||| ||||||||| || |||||||||  ||||||| ||| |    
T  42693603 taagaccatccagaatggtgaatccttcatttatttagcaccatattaaataggcacctccaatgtggagtataacatatgggtgtttatggaggagggt 42693504  T
Q  378 ggctatagaagcac------------tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatga 464  Q
    |||||| |||||||            ||||||||||| |||  | |||   |||||||||||| ||  | | | ||||||||||||| ||| ||||||||    
T  42693503 ggctatggaagcaccctctctctctctctctcttcat-tttcatgggtttcatttaataaatcttagtaaaatgaataaattttgttaaaaatgtaatga 42693405  T
Q  465 tataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatg 561  Q
    |||| | ||||| |||   | |||| |||||||||||||||||| ||  |||||||||||||||||| || |||||| |||||||||||| ||||||    
T  42693404 tatagagttattggtggagcttattaaataatttcttttgaggtgctaggttggagaaaattggtgcttattaagtattaccgtaaaattggtgatg 42693308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 438 - 560
Target Start/End: Original strand, 48379617 - 48379739
Alignment:
Q  438 taaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagta 537  Q
    ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||  |  |||||||||||||  ||  || ||    
T  48379617 taaataaattttgttgaaatgtaatgatacaaaaatatttgtgggacctatttaataatttcttttaaggtgtttggttggagaaaattaatgtttatta 48379716  T
Q  538 agtactaccgtaaaattagtgat 560  Q
    |||| ||| ||||||| ||||||    
T  48379717 agtattacggtaaaataagtgat 48379739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 417 - 530
Target Start/End: Original strand, 14625092 - 14625204
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagtt 516  Q
    |||||||||||| ||| | | ||||||||| ||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||  ||    
T  14625092 atttaataaatc-taataaaataaataaatgttgttaaagtgtaatgatataaaattatttgtgggacctatttaataatttattttgaggtgctggatt 14625190  T
Q  517 ggagaaaattggtg 530  Q
    |||||||| |||||    
T  14625191 ggagaaaaatggtg 14625204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 48379468 - 48379561
Alignment:
Q  276 tctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatgga 370  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||| ||||| |||| ||||||| |||||||    
T  48379468 tctaaaaccatccacaatggtgggtgcttcacctatttagcaccacattaaataggca-ccccattgtagagtataatacatgggtggctatgga 48379561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 14624964 - 14625057
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatgga 370  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||||||||||  ||||| || ||||||||| | |||||||||||| |||||||    
T  14624964 ctaagaccatctacaatggtgggtgcttcacctatttagcaccacattaaagaggcactcctattgtggagaataatatatgggtggctatgga 14625057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 438 - 546
Target Start/End: Complemental strand, 9693983 - 9693875
Alignment:
Q  438 taaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagta 537  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||  ||||||||| ||||||  || |||| | ||||||||||| || ||    
T  9693983 taaataaattttgttgaaatgtaatgatatagaattatttgtggaacctattttgtaatttcttgtgaggtgttgtgttgaataaaattggtgcttatta 9693884  T
Q  538 agtactacc 546  Q
    |||| ||||    
T  9693883 agtattacc 9693875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 306 - 527
Target Start/End: Original strand, 4085533 - 4085748
Alignment:
Q  306 acctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagca--ctctctcttcata 403  Q
    ||||||| |||||||||||||||  | ||| ||||| |||||||||||||||||||| |||||||||||  | | ||| |||| |  ||||||||||||     
T  4085533 acctattgagcaccacattaaatatgaacctccattatggagtaaaatatatgggtgtctatggagaagagtagttatcgaagtatcctctctcttcatt 4085632  T
Q  404 ttttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttctttt 503  Q
    ||||    |||  |||||||| ||| ||| |        |||||||||||||||||||||||||||||||||||| |  || |||| ||||||||| |||    
T  4085633 ttttacgagtctcatttaatagatcttaata--------aaattttgttgaaatgtaatgatataaaattatttgcggaacttattcaataatttccttt 4085724  T
Q  504 gaggtactgagttggagaaaattg 527  Q
    ||| |  ||||||| |||||||||    
T  4085725 gagatgttgagttgaagaaaattg 4085748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 43728716 - 43728626
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatgga 370  Q
    |||||||  |||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||  || ||||||| |||||||||    
T  43728716 agaccatttacaatggtggatgcttcatctatttagcaccacattaaataggcacctccattgtggagtgtaacatatgggcgcctatgga 43728626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 278 - 398
Target Start/End: Complemental strand, 9694177 - 9694057
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatggg-tgcctatggagaagga 376  Q
    ||||| |||||| |||||||| ||||| ||||||||||||||| | ||||| |||| ||||||||||||||| || || |||| |||||||||||||||     
T  9694177 taagaacatccaaaatggtgggtgcttcacctatttagcaccatactaaataggca-ccccattgtggagtataacatttgggttgcctatggagaaggg 9694079  T
Q  377 tggctatagaagcactctctct 398  Q
    ||||||  ||||||| ||||||    
T  9694078 tggctaaggaagcaccctctct 9694057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 503
Target Start/End: Complemental strand, 33737255 - 33737187
Alignment:
Q  435 tattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttctttt 503  Q
    |||| ||||||| ||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  33737255 tatttaataaatcttgttgaaatgtaattatataaaattatatgtggggcctatttaataatttctttt 33737187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 277 - 428
Target Start/End: Complemental strand, 33737397 - 33737243
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    |||||||||||||||||  || ||| || | |||||||||||||||||| || |||| | ||||||||||||| |||| ||| ||| ||| |||||| ||    
T  33737397 ctaagaccatccacaataatgaatgtttcatctatttagcaccacattagataggca-ctccattgtggagtataatacatgagtggctacggagaaaga 33737299  T
Q  377 tggctatagaagca----ctctctcttcatattttgttggtcctatttaataaatc 428  Q
    || ||||  |||||    |||||||||||| |||  | ||||||||||||||||||    
T  33737298 tgactatgaaagcaccctctctctcttcatttttcatgggtcctatttaataaatc 33737243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 562
Target Start/End: Complemental strand, 26450959 - 26450865
Alignment:
Q  467 taaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||||||||||  |||||||| |||||||| ||||||||| ||| |||||||||||| ||||| || |||||| || | |||||| ||||||||    
T  26450959 taaaattatttgtaggacctattcaataattt-ttttgaggtgctgggttggagaaaatgggtgcttattaagtattagcataaaatgagtgatgt 26450865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 531
Target Start/End: Complemental strand, 48941500 - 48941406
Alignment:
Q  438 taaataaattttg-ttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    ||||||||||||  ||||||||||||||||| ||||||||| |   | ||||||  |||||||||||| ||| ||| ||||||||||||||||||    
T  48941500 taaataaatttttattgaaatgtaatgatatgaaattatttatagaatctatttcgtaatttcttttgtggtgctgggttggagaaaattggtgc 48941406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 25389809 - 25389752
Alignment:
Q  284 catccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccatt 341  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| | ||||| ||||    
T  25389809 catcaacaatggtgggtgcttaacctatttagcaccacattaaatagacaccctcatt 25389752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 26451866 - 26451808
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattat 475  Q
    |||||||||||| ||| | | | ||||||||||| ||||||||||||||||||||||||    
T  26451866 atttaataaatcttaataaaattaataaattttgatgaaatgtaatgatataaaattat 26451808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 489
Target Start/End: Complemental strand, 1243814 - 1243774
Alignment:
Q  449 tgttgaaatgtaatgatataaaattatttgtgagacctatt 489  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  1243814 tgttgaaatgtaatgatataaaattatttgtgggatctatt 1243774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 472
Target Start/End: Original strand, 51037334 - 51037367
Alignment:
Q  439 aaataaattttgttgaaatgtaatgatataaaat 472  Q
    |||||||||||||||||||||||| |||||||||    
T  51037334 aaataaattttgttgaaatgtaataatataaaat 51037367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 278 - 562
Target Start/End: Original strand, 545 - 818
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||||| |    
T  545 taagaccatccacaatggtgaatgcttcacctatttaacaccacattaaataggcacccccattgtggagaataatatatgggtggctatggagaagggt 644  T
Q  378 ggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaata-aattttgttgaaatgtaatgatataaaattatt 476  Q
    |||||| ||||||| |||||||||| ||          | ||||||||||| |  ||||  ||||| ||| ||||| |||||||||||||||||||||||    
T  645 ggctatggaagcaccctctcttcatttt----------tctttaataaatctt--aataaaaaatataatgttgttaaaatgtaatgatataaaattatt 732  T
Q  477 tgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||| ||||||||||||||||| ||||||||| ||  ||||||||||| |||||| || |||||| |||| |||||| | ||||||    
T  733 tgtgggacctatttaataatttattttgaggtgctaggttggagaaaaatggtgcttattaagtattaccataaaatgaatgatgt 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 278 - 562
Target Start/End: Original strand, 23418857 - 23419137
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    ||||||||||||||||| ||| ||||| | ||||||| ||||  ||||||| |||||||||||||||||||| |||||||||||| |||||||||| | |    
T  23418857 taagaccatccacaatgatgggtgcttcatctatttaacaccgtattaaataggcacccccattgtggagtataatatatgggtggctatggagaatggt 23418956  T
Q  378 ggctatagaagcactctctct----tcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaatt 473  Q
    |||||| ||||||| ||||||    |||| |||  | ||||| |||||||||||| ||| |        |||||||||||||||||||||||||||||||    
T  23418957 ggctatggaagcaccctctctctattcatttttcttgggtcccatttaataaatcttaata--------aaattttgttgaaatgtaatgatataaaatt 23419048  T
Q  474 atttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||||  | ||||||||||||||||||||||||| ||| ||||||||||||  |||| || |||||| ||| ||||||| ||||||||    
T  23419049 atttgtagggcctatttaataatttcttttgaggtgctgggttggagaaaatcagtgcttattaagtattactgtaaaataagtgatgt 23419137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 312 - 555
Target Start/End: Complemental strand, 10667553 - 10667307
Alignment:
Q  312 ttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagcac----tctctcttcatatttt 407  Q
    ||||||| | ||||||| | |||  ||||||| |||||||||||||||||| |||| |||||||  || ||| |||||||    ||||||||||| |||     
T  10667553 ttagcactatattaaatagccacatccattgtagagtaaaatatatgggtgtctatagagaagggaggttatggaagcaccctctctctcttcatttttc 10667454  T
Q  408 gttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgagg 507  Q
        ||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||      
T  10667453 ccgagtcctatttaataaatcttaacaaattaaataaattttgttaaaatgtaatgatatagaattatttgtgagacctatttaataattt-ttttgaaa 10667355  T
Q  508 tactgagttggagaaaattggtgcctagtaagtactaccgtaaaatta 555  Q
    | | | |||||||||||||| ||| || |||||| |||||||||||||    
T  10667354 ttcagggttggagaaaattgatgcttattaagtattaccgtaaaatta 10667307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 277 - 478
Target Start/End: Original strand, 19279424 - 19279629
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    |||||||||||||||||||||| ||||| |||||||||||| |||||||||| | ||| ||| || ||||||| |||| ||||||| |||||||||||||    
T  19279424 ctaagaccatccacaatggtgggtgcttcacctatttagcatcacattaaatagacacaccctttatggagtataatacatgggtggctatggagaagga 19279523  T
Q  377 tggctatagaagca----ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaat 472  Q
    ||||||| ||||||    |||||||||| | |||  | | ||  |||||||||||  ||| | | |||||||||||||||||||||||||||||||||||    
T  19279524 tggctatggaagcaccctctctctcttcctttttcatggatcacatttaataaatattaataaaataaataaattttgttgaaatgtaatgatataaaat 19279623  T
Q  473 tatttg 478  Q
    ||||||    
T  19279624 tatttg 19279629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 280 - 560
Target Start/End: Original strand, 16561741 - 16562024
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||| ||||||||||||||  |||||| ||||||||||| ||||||||| ||  ||| | ||||||||||||| |||| |||| ||||||||||   |||    
T  16561741 agacgatccacaatggtgggagcttaatctatttagcactacattaaataggagccctcgttgtggagtaaaaaatataggtgtctatggagaaatgtgg 16561840  T
Q  380 ctatagaagcactctctct--tcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
    |||| ||||||||||||||  |||| |||    | |   |||||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||    
T  16561841 ctatggaagcactctctctcttcatttttcacggatttcatttaataaatcttaataaattaaataaattttgttgaaatataatgatatataattattt 16561940  T
Q  478 gtgagacctatttaataa-tttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgat 560  Q
    ||| ||| |||||||||| ||| ||||||||  ||| |||||||| ||||||| | || |||||| ||  ||||||||| ||||    
T  16561941 gtgggacttatttaataatttttttttgaggggctgggttggagataattggtacttattaagtattattgtaaaattaatgat 16562024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 292 - 531
Target Start/End: Original strand, 27903561 - 27903802
Alignment:
Q  292 atggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatggctatagaagca- 390  Q
    ||||||| || || ||||||||||||| ||||||||| |||||||| ||||||||||| |||| ||||||| ||||||| | || ||| ||| ||||||     
T  27903561 atggtgggtgtttcacctatttagcactacattaaataggcacccc-attgtggagtataatacatgggtgactatggaaatgg-tggatatggaagcat 27903658  T
Q  391 ---ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagaccta 487  Q
       |||||||||||| |||  | ||||  |||||||||||  ||||| | ||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  27903659 catctctctcttcatttttcatgggtcacatttaataaatattaaaaaaataattaaattttgttaaaatgtaatgatataaaattatttgtgggaccta 27903758  T
Q  488 tttaataatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    |||||||| ||||||| || |  || ||| ||||||||||||||    
T  27903759 tttaataacttctttttagatgttgggtttgagaaaattggtgc 27903802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 417 - 551
Target Start/End: Complemental strand, 35377906 - 35377772
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagtt 516  Q
    |||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||| |||    
T  35377906 atttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtatgccctatttaataatttcttttgaggtgctgggtt 35377807  T
Q  517 ggagaaaattggtgcctagtaagtactaccgtaaa 551  Q
    |||||||||| |||| || |||||| |||| ||||    
T  35377806 ggagaaaattagtgcttactaagtattaccataaa 35377772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 280 - 530
Target Start/End: Complemental strand, 43101040 - 43100784
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||  |||||| |||||||||||| || |||||||||| ||||||| ||| |||    
T  43101040 agaccatcca-aatggtgggtgcttaacctatttagcaccacattaaataagcaccctcattgtggagtataacatatgggtgcttatggagtaggttgg 43100942  T
Q  380 ctatagaagcactct--------ctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgtt-gaaatgtaatgatataaa 470  Q
    |||| ||||||| ||        |||||||  |||  | ||||| |||||||||||| |   | | | |||||||||||||  |||||||||| ||||      
T  43100941 ctatggaagcaccctccctcccactcttcaattttcatgggtcccatttaataaatctttgtaaaatgaataaattttgttaaaaatgtaatggtatagg 43100842  T
Q  471 attatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtg 530  Q
     ||||||||| | |||| ||||||||||||||||||| | ||||||||||||||||||||    
T  43100841 gttatttgtg-ggcctagttaataatttcttttgagg-aatgagttggagaaaattggtg 43100784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 278 - 398
Target Start/End: Complemental strand, 9622479 - 9622359
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||| || ||||| |||| ||||||  ||| |    
T  9622479 taagaccatccacaatggtgggtgcttcacctatttagcaccacattaaatagacacccccattgtggagtataacatatgagtgcttatggaagagggt 9622380  T
Q  378 ggctatagaagcactctctct 398  Q
    | |||| ||||||| ||||||    
T  9622379 gactatggaagcaccctctct 9622359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 498
Target Start/End: Original strand, 7211394 - 7211453
Alignment:
Q  440 aataaattttgttgaaatgtaat-gatataaaattatttgtgagacctatttaataattt 498  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||    
T  7211394 aataaattttgttgaaatgtcattgatataaaattatttgtgggacctatttaataattt 7211453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 562
Target Start/End: Complemental strand, 5423136 - 5422965
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaa-tgtaatgatataaaattatttgtgagacctatt 489  Q
    |||||||||||| || | | |||||||||||||||||| ||  | | | ||||||||| ||| ||| ||||| |||||| | ||||| ||| | ||||||    
T  5423136 ctctctcttcattttatatgggtcctatttaataaatcttagtaaaatgaataaatttcgttaaaaatgtaaagatatagagttattggtggg-cctatt 5423038  T
Q  490 taataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||| | ||||||||||||  |   ||||||||||||||||| || |||||| ||| |||||||| |||||||    
T  5423037 taattaattcttttgaggtgttagattggagaaaattggtgcttattaagtattactgtaaaattggtgatgt 5422965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 479
Target Start/End: Complemental strand, 6783555 - 6783516
Alignment:
Q  440 aataaattttgttgaaatgtaatgatataaaattatttgt 479  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  6783555 aataaattttattgaaatgtaatgatataaaattatttgt 6783516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 39629009 - 39628973
Alignment:
Q  275 ttctaagaccatccacaatggtggatgcttaacctat 311  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39629009 ttcttagaccatccacaatggtggatgcttaacctat 39628973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 277 - 562
Target Start/End: Complemental strand, 9032806 - 9032508
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||| | ||| ||||||| |||| ||||||| ||||||||||||     
T  9032806 ctaagaccatccaaaatggtgggtgcttcacctatttaacaccacattaaataggcacctctattatggagtataatacatgggtggctatggagaaggg 9032707  T
Q  377 tggctatagaagca--------------ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaat 462  Q
    ||||||| ||||||              |||||||||||| |||  | ||||| ||| |||||||| ||| | | ||||||||||||||||||| |||||    
T  9032706 tggctatggaagcatcctctctctctctctctctcttcatttttcatgggtcccatt-aataaatcttaataaaataaataaattttgttgaaacgtaat 9032608  T
Q  463 gatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||||||||||||||||| ||||||||||||||| |||||| ||||  || ||||||||||||| |||| || |||||| ||| ||||||| ||||||||    
T  9032607 gatataaaattatttgtgggacctatttaataatctcttttaaggtgttgggttggagaaaattagtgcttattaagtattacggtaaaataagtgatgt 9032508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 277 - 524
Target Start/End: Original strand, 25322804 - 25323054
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaagga 376  Q
    ||||||||||||| |||| |||||| |||||||||||| ||||||||||||| ||||||| |||||| ||||| |||| || | || ||||||||||||     
T  25322804 ctaagaccatccataatgatggatgtttaacctatttaacaccacattaaataggcaccctcattgtagagtataatacatcgatggctatggagaaggg 25322903  T
Q  377 t-ggctatagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaa 471  Q
    | |||||  |||||||    ||||||||||| |||  | ||||| |||||||||||| ||| | | ||||||||||||||||||||||||||||||||||    
T  25322904 ttggcta--gaagcaccttctctctcttcatttttcatgggtcccatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaa 25323001  T
Q  472 ttatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaa 524  Q
    ||||||||| ||| |||||||||||||||||| ||||  ||||||| ||||||    
T  25323002 ttatttgtgggacatatttaataatttcttttaaggtgttgagttgaagaaaa 25323054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 275 - 562
Target Start/End: Complemental strand, 7315466 - 7315172
Alignment:
Q  275 ttctaagaccatccacaatggtggatgcttaacc--tatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggaga 372  Q
    ||||||||  |||||||||||||| ||||| ||   ||||||||||||  |||||| | ||||| |||||||||||| |||| ||||||| |||||||||    
T  7315466 ttctaagataatccacaatggtgggtgcttcacacatatttagcaccatgttaaatagacaccctcattgtggagtataatacatgggtggctatggaga 7315367  T
Q  373 aggatggctatagaagcac----tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatata 468  Q
    ||| || |||| |||||||    |||||||| || ||   | ||||| |||||||||||| ||| | | |||||||||||||||||||||||||||| ||    
T  7315366 agggtgactatggaagcaccctctctctcttaattttccatgggtcccatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatgta 7315267  T
Q  469 aaattatttgtg-agacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||||||||||  |||||||||||||||||||||| ||||  ||  ||||||||||||||||| || |||||| |   ||||||| ||||||||    
T  7315266 aaattatttgtgtggacctatttaataatttcttttaaggtgttggattggagaaaattggtgcttattaagtaatgtggtaaaatgagtgatgt 7315172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 417 - 543
Target Start/End: Original strand, 38935231 - 38935357
Alignment:
Q  417 atttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagtt 516  Q
    |||||||||||| ||| | | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||| |||    
T  38935231 atttaataaatcttaataaaataaataaattttgttgaaatgtaaagatatagaattatttgtgagacctatttaataatttcgtttgaggtgctgggtt 38935330  T
Q  517 ggagaaaattggtgcctagtaagtact 543  Q
    ||||||||||||||| |||||| ||||    
T  38935331 ggagaaaattggtgcttagtaaatact 38935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 280 - 421
Target Start/End: Original strand, 9548462 - 9548607
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||| |||||| ||||||||| |||||| |||    
T  9548462 agaccatctacaatggtggatgcttaacctatttagcaccacattaaatagaca-ccccattgtggagtaaactatatgagtgcctatgaagaagggtgg 9548560  T
Q  380 ctatagaagca----ctctctcttca-tattttgttggtcctattta 421  Q
    |||| ||||||    || |||||||| | ||||||||||||||||||    
T  9548561 ctatggaagcaacctctatctcttcatttttttgttggtcctattta 9548607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 278 - 395
Target Start/End: Original strand, 19494728 - 19494845
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    ||||||||||||||||| ||||||||| | |||||||| |||| ||||||| |||||||||||||||||||| |||||||||||| |||||||||| | |    
T  19494728 taagaccatccacaatgatggatgcttcatctatttagtaccatattaaataggcacccccattgtggagtataatatatgggtgactatggagaatggt 19494827  T
Q  378 ggctatagaagcactctc 395  Q
    |||||| |||||||||||    
T  19494828 ggctatggaagcactctc 19494845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 394 - 531
Target Start/End: Original strand, 20638550 - 20638687
Alignment:
Q  394 tctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaat 493  Q
    ||||||||| |||  | ||||| |||||||||||| ||  | | ||||||||||||||  ||||||||||||||| | |||||||| |||||||||||||    
T  20638550 tctcttcatttttcatgggtcccatttaataaatcgtattaaaataaataaattttgtaaaaatgtaatgatatagagttatttgtaagacctatttaat 20638649  T
Q  494 aatttcttttgaggtactgagttggagaaaattggtgc 531  Q
    ||||||||||||||||||  ||| ||||||||||||||    
T  20638650 aatttcttttgaggtactaggttagagaaaattggtgc 20638687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 435 - 560
Target Start/End: Original strand, 5732716 - 5732841
Alignment:
Q  435 tattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgccta 534  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||| |||| |||  |||||||||||| |||   |    
T  5732716 tatttaataaattttgttgaaatgtaatgatatagaattatttgtgggacttatttaataattttttttaaggtgctggattggagaaaattagtgttaa 5732815  T
Q  535 gtaagtactaccgtaaaattagtgat 560  Q
     |||||| ||| ||||||||| ||||    
T  5732816 ttaagtattactgtaaaattaatgat 5732841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 396 - 506
Target Start/End: Original strand, 15463999 - 15464109
Alignment:
Q  396 tcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataa 495  Q
    ||||||| ||| || ||||  |||||||||||  ||| | | ||||||||||||||||||||||| |||| |||||||||||||  ||||||||||||||    
T  15463999 tcttcatttttcgtaggtctcatttaataaattttaataaaataaataaattttgttgaaatgtagtgatttaaaattatttgtaggacctatttaataa 15464098  T
Q  496 tttcttttgag 506  Q
    |||||||||||    
T  15464099 tttcttttgag 15464109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 443 - 553
Target Start/End: Original strand, 43652645 - 43652755
Alignment:
Q  443 aaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtac 542  Q
    |||| |||||||||||||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| ||| |||||||||||||||||  || |||||||    
T  43652645 aaatgttgttgaaatgtaatgatataaaattatttatgatatctatttagtaatttctgttgcggtgctgggttggagaaaattggtgtttattaagtac 43652744  T
Q  543 taccgtaaaat 553  Q
    ||  |||||||    
T  43652745 tattgtaaaat 43652755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 411 - 529
Target Start/End: Complemental strand, 840267 - 840149
Alignment:
Q  411 ggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtac 510  Q
    ||||| || ||||||||| ||| | | ||| ||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||      
T  840267 ggtcccatgtaataaatcttaataaaataagtaaatgttgttaaaatgtaataatataaaattatttgtgagacttatttaataatttattttgaggtgt 840168  T
Q  511 tgagttggagaaaattggt 529  Q
    || |||| |||||| ||||    
T  840167 tgggttgaagaaaaatggt 840149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 373
Target Start/End: Original strand, 38935025 - 38935121
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccc-cattgtggagtaaaatatatgggtgcctatggagaa 373  Q
    ||||||||||||||  | ||||||||| || ||||||||||||||||||||   |||||| |||||||||||| |||||||||||| ||| ||||||    
T  38935025 taagaccatccacatcgatggatgcttcacatatttagcaccacattaaataaacacccctcattgtggagtataatatatgggtgtctagggagaa 38935121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 509
Target Start/End: Complemental strand, 22705719 - 22705648
Alignment:
Q  438 taaataaattttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggta 509  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  ||||||||  ||||||||| |||||||    
T  22705719 taaataaattttgttgaaatgtattgacataaaattatttgtggaacctattttgtaatttcttatgaggta 22705648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 6190276 - 6190193
Alignment:
Q  279 aagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtg 362  Q
    |||||||||||||||||||| ||||| |||| ||||||| || ||||||| | ||||||||||||| ||||  |||| ||||||    
T  6190276 aagaccatccacaatggtgggtgcttcacctgtttagcatcatattaaatagacacccccattgtgaagtatgatatttgggtg 6190193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 840384 - 840296
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatgga 370  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||| |||||||||  || | |||||||||||| |||||||    
T  840384 agaccattcacaatggtgggtgcttcacctacttagcaccacattaaataggca-ccccattgt-aagaataatatatgggtggctatgga 840296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 5732555 - 5732612
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacc 335  Q
    |||||||||||| |||  ||| ||||||||||||||||||||||||||||| ||||||    
T  5732555 taagaccatccataataatgggtgcttaacctatttagcaccacattaaataggcacc 5732612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 5803073 - 5803130
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacc 335  Q
    |||||||||||| |||  ||| ||||||||||||||||||||||||||||| ||||||    
T  5803073 taagaccatccataataatgggtgcttaacctatttagcaccacattaaataggcacc 5803130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 459 - 560
Target Start/End: Original strand, 19494892 - 19494993
Alignment:
Q  459 taatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtg 558  Q
    |||||||||||||||||||||   || ||||||||||||||||||||| |  || |||||||||||| ||||| || ||| || ||  ||||||| ||||    
T  19494892 taatgatataaaattatttgtataacttatttaataatttcttttgagatgttgggttggagaaaatcggtgcttattaaatattatggtaaaatgagtg 19494991  T
Q  559 at 560  Q
    ||    
T  19494992 at 19494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 526
Target Start/End: Original strand, 14169938 - 14170007
Alignment:
Q  457 tgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaatt 526  Q
    ||||||||| || ||||||||||   ||||||||||||||||||||| ||||  || |||||||||||||    
T  14169938 tgtaatgatgtataattatttgtcgaacctatttaataatttcttttaaggtgttgggttggagaaaatt 14170007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 20379783 - 20379821
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcac 318  Q
    |||||||||||||||||||||| || |||||||||||||    
T  20379783 agaccatccacaatggtggatgtttcacctatttagcac 20379821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 32406857 - 32406899
Alignment:
Q  277 ctaagaccatccacaatggtggatgcttaacctatttagcacc 319  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||    
T  32406857 ctaagagcatccacaatggtgggtgcttcacctatttagcacc 32406899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 480
Target Start/End: Original strand, 33047843 - 33047917
Alignment:
Q  406 ttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtg 480  Q
    |||| |||||||||||| ||||| ||| | | |||||||||| ||||  ||| |||||||||| |||||||||||    
T  33047843 ttgtgggtcctatttaaaaaatcataataaaataaataaattgtgtttcaatataatgatatagaattatttgtg 33047917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 31425295 - 31425367
Alignment:
Q  448 ttgttgaaatgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggaga 521  Q
    ||||| ||||||||||||||| | |||||  ||||||  ||||||||| || ||||||||| ||||||||||||    
T  31425295 ttgttaaaatgtaatgatatagagttattgttgagactcatttaataa-ttattttgaggtgctgagttggaga 31425367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 278 - 562
Target Start/End: Complemental strand, 61113 - 60843
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||| ||||||||||||||| || ||||||||||||||| ||||||| ||||| |||||||||||||| |||| ||||||| |||||||           
T  61113 taagaccaaccacaatggtggatgtttcacctatttagcaccatattaaataggcactcccattgtggagtataatacatgggtggctatgga------- 61021  T
Q  378 ggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
          || | | |||||||||||| |||  | ||| | |||||| ||||| ||| | | ||||||||||||||||||||||||||||||||||||||||    
T  61020 ------agcacc-ctctctcttcatttttcatgggttccatttaaaaaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattattt 60928  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||| | |||||||||||||| ||||| |||| ||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||    
T  60927 gtgggccctatttaataattccttttaaggtgctgggttggagaaaattgatgcttattaagtattacggtaaaatgagtgatgt 60843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 273 - 480
Target Start/End: Original strand, 428276 - 428490
Alignment:
Q  273 ggttctaagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggaga 372  Q
    |||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||| ||||||||||||||| |||| ||||||| |||||||||    
T  428276 ggttttaagaccatccacaatggtgggtgcttcacctatttagcaccagattaaataggca-ccccattgtggagtataatacatgggtggctatggaga 428374  T
Q  373 aggatggctatagaagcac--------tctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatga 464  Q
    ||| ||||||| |||||||        ||||||||||| |||  | |||   |||||||||||| ||| | | |||||||||||||||||||||||||||    
T  428375 agggtggctatggaagcaccctctctatctctcttcatttttcatgggtttgatttaataaatcttaataaaataaataaattttgttgaaatgtaatga 428474  T
Q  465 tataaaattatttgtg 480  Q
    ||||| ||||| ||||    
T  428475 tataagattatctgtg 428490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 278 - 562
Target Start/End: Complemental strand, 2861 - 2592
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggat 377  Q
    |||||||| |||||||||||| || || ||||||||||||||| ||||||| |||||  ||||| ||||||| |||| ||||||| || ||||           
T  2861 taagaccaaccacaatggtgggtgtttcacctatttagcaccatattaaataggcacttccattatggagtataatacatgggtggctctgga------- 2769  T
Q  378 ggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattattt 477  Q
          || | | |||||||||||| ||||  |||||| |||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||| ||    
T  2768 ------agcacc-ctctctcttcat-ttttcatggtcccatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattagtt 2677  T
Q  478 gtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
     ||   |||||||||||||||||||| |||| |||  ||||||||||||| ||| || |||||| ||| ||||||| ||||||||    
T  2676 atggaccctatttaataatttcttttaaggtgctggattggagaaaattgatgcttattaagtattacggtaaaatgagtgatgt 2592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 562
Target Start/End: Complemental strand, 178376 - 178193
Alignment:
Q  377 tggctatagaagcactctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatt 476  Q
    ||||||| ||||||| |||||||   |||||  || ||| |||||||||||| ||| | | |||||||||||| |||||||||||||||| ||||||| |    
T  178376 tggctatggaagcaccctctcttttcatttt--tgatcccatttaataaatcttaataaaataaataaattttattgaaatgtaatgatacaaaattagt 178279  T
Q  477 tgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    |||| | |||||||||||||||||||| ||||||||  ||||||||||||| ||| || |||||| ||| ||||||| ||||||||    
T  178278 tgtgtgccctatttaataatttcttttaaggtactggattggagaaaattgatgcttattaagtattacggtaaaatgagtgatgt 178193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 362
Target Start/End: Complemental strand, 178442 - 178375
Alignment:
Q  295 gtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtg 362  Q
    |||| ||||| |||||||||||||||  |||||| ||||| |||||||| ||||| |||| |||||||    
T  178442 gtgggtgcttcacctatttagcaccatgttaaataggcactcccattgtagagtataatacatgggtg 178375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 440 - 563
Target Start/End: Original strand, 22871 - 22995
Alignment:
Q  440 aataaattttgttgaaa-tgtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaa 538  Q
    ||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||| ||  |||||||||||||||||| || |||    
T  22871 aataaattttgttaaaaatgtaatgatataaaattattggtgggacctatttaataatttcttttcaggtgctatgttggagaaaattggtgcttattaa 22970  T
Q  539 gtactaccgtaaaattagtgatgta 563  Q
    ||| |||||||||||| ||||||||    
T  22971 gtagtaccgtaaaattggtgatgta 22995  T

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Target: scaffold0466 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 391 - 559
Target Start/End: Complemental strand, 361 - 193
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctattt 490  Q
    |||||||||||| ||||    |||| |||| ||||||| ||| | | |||| ||||||||||||||||| || ||||| ||||||||||  ||| |||||    
T  361 ctctctcttcattttttacaagtcccattttataaatcttaataaaataaagaaattttgttgaaatgttattatatagaattatttgtaggacatattt 262  T
Q  491 aataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtga 559  Q
    ||||||||||||| | |||||| |||||||||||| ||||| || |||||| ||||||||||| |||||    
T  261 aataatttcttttaaagtactgtgttggagaaaatcggtgcttattaagtattaccgtaaaatgagtga 193  T

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Target: scaffold0039 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 391 - 562
Target Start/End: Complemental strand, 94317 - 94147
Alignment:
Q  391 ctctctcttcatattttgttggtcctatttaataaatcctaaaatattaaataaattttgttgaaatgtaatgatataaaattatttgtgagacctattt 490  Q
    |||||||||||| |||  |  ||| ||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||  ||  |||||    
T  94317 ctctctcttcatttttcataagtcttatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtatgatatattt 94218  T
Q  491 aataatttcttttgaggtactgagttggagaaaattggtgcctagtaagtactaccgtaaaattagtgatgt 562  Q
    ||||| |||||||| |||  ||  ||| ||||||||| || ||| |||||| ||||||||||| | ||||||    
T  94217 aataa-ttcttttgtggtgttggattgtagaaaattgatgtctattaagtattaccgtaaaatgactgatgt 94147  T

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Target: scaffold0039; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 101746 - 101628
Alignment:
Q  280 agaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatggagaaggatgg 379  Q
    ||||||| || ||||||  |||||| | |||||||  |||  ||||||| ||||  | ||| ||| |||| |||||||||||| |||||||||||| |||    
T  101746 agaccattcataatggtaaatgcttcatctatttaataccgtattaaataggcagtctcatcgtgtagtataatatatgggtggctatggagaagggtgg 101647  T
Q  380 ctatagaagcactctctct 398  Q
    |||| ||||||| ||||||    
T  101646 ctatggaagcaccctctct 101628  T

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Target: scaffold0281 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 22338 - 22270
Alignment:
Q  278 taagaccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggag 347  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||| | || |||||||||||||    
T  22338 taagaccatccacaatggtggatgcttcacctatttaacaccacattaaatagaca-ccccattgtggag 22270  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 71785 - 71700
Alignment:
Q  283 ccatccacaatggtggatgcttaacctatttagcaccacattaaatgggcacccccattgtggagtaaaatatatgggtgcctatg 368  Q
    |||||||||||| | | || || ||||||||||||||| | ||||| ||||||| |||| ||||||| ||||| ||||||||||||    
T  71785 ccatccacaatgattggtgtttcacctatttagcaccatactaaataggcacccacattatggagtataatatttgggtgcctatg 71700  T

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Target: scaffold0332 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 554
Target Start/End: Complemental strand, 4507 - 4392
Alignment:
Q  440 aataaattttgttgaaat-gtaatgatataaaattatttgtgagacctatttaataatttcttttgaggtactgagttggagaaaattggtgcctagtaa 538  Q
    ||||||||||||| |||  || ||| |||| | ||||||||||  |||| ||||||| ||||||||| ||  || |||||||||||||||||| || |||    
T  4507 aataaattttgttaaaaacgtgatggtatatagttatttgtgaagcctagttaataaattcttttgaagtgttgggttggagaaaattggtgcttattaa 4408  T
Q  539 gtactaccgtaaaatt 554  Q
     || ||| ||||||||    
T  4407 atattactgtaaaatt 4392  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 577 - 609
Target Start/End: Complemental strand, 3146 - 3114
Alignment:
Q  577 tatctttatctttattatatacatttgccttaa 609  Q
    ||||||||||||||||||||| |||||||||||    
T  3146 tatctttatctttattatatatatttgccttaa 3114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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