View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-11 (Length: 623)
Name: NF1526-2-Insertion-11
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 623
Target Start/End: Original strand, 33993045 - 33993660
Alignment:
| Q |
8 |
taaggctgcatcggccacatttgaccatgcttcttagtgatatcaaagatagtgacgcggccacaaccattaatgcaaattaaaacattcattatatcca |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993045 |
taaggctgcatcagccacatttgaccatgcttcttagtgatatcaaagatagtgacgcggccacaaccattaatgcaaattaaaacattcattatatcca |
33993144 |
T |
|
| Q |
108 |
gaattagctctcgtttagtttcactacttacttggaaagtgtgtcgcagatatgtggagattggatttgagttaggcattccagcatcgctgaacgggaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33993145 |
gaattagctctcgtttagtttcactacttacttggaaagtgtgtcgcagatatgtggagattggatttgagttaggcattccagtatcgctgaacgggaa |
33993244 |
T |
|
| Q |
208 |
gaggctttctccaggaaatttggttgctgagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993245 |
gaggctttctccaggaaatttggttgctgagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatg |
33993344 |
T |
|
| Q |
308 |
gagagccgaggagtttacgaaactccaggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagctta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993345 |
aagagccgaggagtttacgaaactccaggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagctta |
33993444 |
T |
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| Q |
408 |
aagactcattagcacttaaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcaca |
507 |
Q |
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| T |
33993445 |
aagactcattagcacttaaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcaca |
33993544 |
T |
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| Q |
508 |
gactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttca |
607 |
Q |
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| T |
33993545 |
gactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttca |
33993644 |
T |
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| Q |
608 |
tttgagagtggggaga |
623 |
Q |
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| T |
33993645 |
tttgagagtggggaga |
33993660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 136 - 578
Target Start/End: Original strand, 34000175 - 34000617
Alignment:
| Q |
136 |
tacttggaaagtgtgtcgcagatatgtggagattggatttgagttaggcattccagcatcgctgaacgggaagaggctttctccaggaaatttggttgct |
235 |
Q |
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|||| ||||| | ||| |||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||| || |||||||||||||||||| |
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| T |
34000175 |
tactcggaaaatctgttgcagatatgtggagataggatttgagtcaggcattccagtgacagtgaacgggaagaggctatccccaggaaatttggttgct |
34000274 |
T |
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| Q |
236 |
gagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatggagagccgaggagtttacgaaactccag |
335 |
Q |
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| T |
34000275 |
gagcttaatgagataggtggaaggcatggaataggctgtgtcgatatagttgaaaaccacattgtaggcctgaagagccgaggagtttatgaaactccag |
34000374 |
T |
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| Q |
336 |
gtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgcaga |
435 |
Q |
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| T |
34000375 |
gtggcaccattttcttcaccgcagcaagagacttagagagtttaacactcgatcgtgaaacacttcagcttaaagactcgttagcaattaagtatgcaga |
34000474 |
T |
|
| Q |
436 |
gttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttgaaa |
535 |
Q |
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| T |
34000475 |
gttagtgtatgctggaaggtggttcgatcctcttcgtgagtcaatggatgcattcatggaaaagatctcagagattacaacaggttcagtgagtttgaaa |
34000574 |
T |
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| Q |
536 |
ctgtataaaggtagtgcttctgtgacgggtcggaagagtcctt |
578 |
Q |
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| T |
34000575 |
ctgtataaaggcagtgcttctgtgacgggtcggaagagtcctt |
34000617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 233 - 614
Target Start/End: Complemental strand, 18852698 - 18852317
Alignment:
| Q |
233 |
gctgagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatggagagccgaggagtttacgaaactc |
332 |
Q |
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|||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||| | || ||||||||||| | ||||| |||||||||||||| | |
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| T |
18852698 |
gctgagctcaatgagataggtggaaggcacggaattggccggatcgacatggttgagaatcggcttgtaggcatgaaaagccgcggagtttacgaaacac |
18852599 |
T |
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| Q |
333 |
caggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgc |
432 |
Q |
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| T |
18852598 |
ctggtggaactatcctttttgctgccgcacgggagttggagtctttgacacttgatcgagaaacaatacaggtcaaagattcattagcacttaaatatgc |
18852499 |
T |
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| Q |
433 |
agagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttg |
532 |
Q |
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| T |
18852498 |
agagttagtgtatgccggaagatggtttgatccacttcgcgaatccatggatgcctttatgcagaagattacagagaccacaacaggttctgtgactttg |
18852399 |
T |
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| Q |
533 |
aaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgaga |
614 |
Q |
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| T |
18852398 |
aaattatacaaaggttctgttactgtaacaggtaggaagagcccctttagcctgtataggcaagatatctcatcatttgaga |
18852317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 233 - 613
Target Start/End: Complemental strand, 42865809 - 42865429
Alignment:
| Q |
233 |
gctgagctgaatgagataggtggaaggcatggaataggccgtgtcgacttggttgaagaccgcattgtaggcatggagagccgaggagtttacgaaactc |
332 |
Q |
| |
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|||||||| |||||||||||||||| ||| ||||| ||||| ||||| ||||||| | | ||||||||||| ||||||| |||||||| ||||||| |
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| T |
42865809 |
gctgagctcaatgagataggtggaaagcacggaattggccggatcgacatggttgagaataggcttgtaggcatgaagagccgtggagtttatgaaactc |
42865710 |
T |
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| Q |
333 |
caggtggcaccattctcttcactgcagcaagagacttagagactttgactcttgatcgtgaaacacttcagcttaaagactcattagcacttaaatatgc |
432 |
Q |
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| T |
42865709 |
ctggtgggactatcctctttaaagcagcacgggagttggagtctttgacacttgatcgagaaacaatacaggtgaaagatacattagcccttaaatatgc |
42865610 |
T |
|
| Q |
433 |
agagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactacaacaggttcagtgagtttg |
532 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| || |||||||| | || ||| ||||||| | ||| ||||||||||| || | |||| |
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| T |
42865609 |
agagttagtgtatgctggtagatggtttgatccacttcgtgagtcgatggacgcctttatgcagaagattactgcgaccacaacaggttccgttactttg |
42865510 |
T |
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| Q |
533 |
aaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgag |
613 |
Q |
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||| |||| |||||| || | |||| | ||| ||||||||||| ||| | |||||| ||||||| || ||||||||| |
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| T |
42865509 |
aaattgtacaaaggttctgttactgtagctggtatgaagagtccttttagcctgtataggcaagatatctcatcatttgag |
42865429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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