View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-12 (Length: 221)
Name: NF1526-2-Insertion-12
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 41804923 - 41805115
Alignment:
| Q |
8 |
aagcaaattctactggtcctaaatttgcaacttgaaaaccaacatccttggatgccaatatttaactcttgtgttgtggtgaactaattctgaatctagg |
107 |
Q |
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| T |
41804923 |
aagcaaattctactggtcctaaatttgcaacttgaaaaccaacatccttggatgccaatatttaactcttgtgttgtggtgaactaattctgaatctagg |
41805022 |
T |
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| Q |
108 |
tcatattctaaaagataatttgaccaagaaaatatataattgtttctaaagtaaaattaaaattcgataacttcagttatacacagaacaatacaatttc |
207 |
Q |
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| T |
41805023 |
tcatattctaaaagataa-------------------aattgtttctaaagtaaaattaaaattcgataacttcagttat--acagaacaatacaatttc |
41805101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 3385785 - 3385938
Alignment:
| Q |
11 |
caaattctactggtcctaaatttgcaacttgaaaaccaacatccttggatgccaatatttaactcttgtgttgtggtgaactaattctgaatctaggtca |
110 |
Q |
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| T |
3385785 |
caaattctattggtcctaaatttgcaacttcaaaaccaatatccttcgatgcccaaatttaactc-----tcgtggtgaaccaattctaaatcttggcca |
3385879 |
T |
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| Q |
111 |
tattctaaaagataatttgaccaagaaaatatataattgtttctaaagtaaaattaaaa |
169 |
Q |
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| T |
3385880 |
tattctaaaagataatttgaccaagaaaatatataattgtttttaaagtaaaattaaaa |
3385938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 3404830 - 3404867
Alignment:
| Q |
109 |
catattctaaaagataatttgaccaagaaaatatataa |
146 |
Q |
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| T |
3404830 |
catattctaaaagataatttgaccaaataaatatataa |
3404867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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