View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-13 (Length: 762)
Name: NF1526-2-Insertion-13
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 423 - 710
Target Start/End: Original strand, 6932531 - 6932818
Alignment:
| Q |
423 |
taaatcaatttgtgcaacccactgatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacataaaggttaataaaccctctta |
522 |
Q |
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| T |
6932531 |
taaatcaatttgtgcaacccactgatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacctaaaggttaataaaccttctta |
6932630 |
T |
|
| Q |
523 |
aaaatggttagcaaagaaatattgacaactactcaaataatagtaatttatgcctaaacatagcaatgtaattcctcccgaatgaagtgaaataaattga |
622 |
Q |
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| T |
6932631 |
aaaatggttagcaaagaaatattaacaactactcaaattatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattga |
6932730 |
T |
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| Q |
623 |
ctatgaattggagaactttatgccgtctccttgttttctagtccacatctcgatcatctggtataagtataacaatgtgattaggaaa |
710 |
Q |
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| T |
6932731 |
ctatgaattggagaactttatgccgtctccttgttttctagtccacatctcgatcatctggtaaaagtataaaaatgtgattaggaaa |
6932818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 6931643 - 6931825
Alignment:
| Q |
35 |
agcatatctgaggtacgacacatgttggtgtccaataacgatacatgaggttgcatttaatcaatttcattttcgtaagttattattggtgtctatgtga |
134 |
Q |
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| T |
6931643 |
agcatatctgaggtacgacacatgttggtgtccaataacgatacatgaggttgcatttaatcaatttcattttcataagttattattggtgtctatgtga |
6931742 |
T |
|
| Q |
135 |
cagtgttagtatcgtgactgagaggtatccgtatatctgttggtgtttcatagcttgattgtaataaatgaaacaggccctat |
217 |
Q |
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| T |
6931743 |
cagtgttagtatcgtgactgagaggtatccgtatatctgttggtgtttcatagcttgattgtaataaatgaaacaggtcctat |
6931825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 560 - 711
Target Start/End: Complemental strand, 6485994 - 6485843
Alignment:
| Q |
560 |
taatagtaatttatgcctaaacatagcaatgtaattcctcccgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgtttt |
659 |
Q |
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| T |
6485994 |
taatagtaatttatgcctaaacatagcaatgtaattcctctcgaatgaagtgaaataaattgactatgaattggagaactttatgccgtctccttgtttt |
6485895 |
T |
|
| Q |
660 |
ctagtccacatctcgatcatctggtataagtataacaatgtgattaggaaac |
711 |
Q |
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| T |
6485894 |
ctagtccacatctcgatcatctggtataagtataacaatgtgattaggaaac |
6485843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 6486685 - 6486541
Alignment:
| Q |
7 |
acttgtagcactaacacttcagacttaaagcatatctgaggtacgacacatgttggtgtccaataacgatacatgaggttgcatttaatcaatttcattt |
106 |
Q |
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| T |
6486685 |
acttgtagcactaacacttcagacttaaagcgtatctgaggtacgacacatgttggtgtccaataacgatacatgaggttgcatttaatcaatttcattt |
6486586 |
T |
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| Q |
107 |
tcgtaagttattattggtgtctatgtgacagtgttagtatcgtga |
151 |
Q |
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| T |
6486585 |
tcgtaagttattatcggtgtctatgtgacagtgttagtatcgtga |
6486541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 423 - 512
Target Start/End: Complemental strand, 6486079 - 6485990
Alignment:
| Q |
423 |
taaatcaatttgtgcaacccactgatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaacataaaggttaata |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486079 |
taaatcaatttgtgcaacccactgatatatgttattcaccttcgagaaatcctagtataggctaataaacaggaaacataaaggttaata |
6485990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 6931972 - 6932040
Alignment:
| Q |
321 |
atgccatcttatcccttcagatactctacggtattatgaaacttaggaattgaagcctccaacttgtgg |
389 |
Q |
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| T |
6931972 |
atgccatcttatcacttcagatactctatggtattatgaaacttaggaattgaagcctcaaacttgtgg |
6932040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 6931851 - 6931913
Alignment:
| Q |
259 |
aaagagaattatagcaaatgaaaactctaaaatagattaaatttttgttccaggagaacttgat |
322 |
Q |
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| T |
6931851 |
aaagagaattatagcaaatgaaaactctaaaatagattaaa-ttttgttccaggagaacttgat |
6931913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 707 - 742
Target Start/End: Original strand, 6933295 - 6933330
Alignment:
| Q |
707 |
gaaacattgatgctttgttatctacgaaaattctat |
742 |
Q |
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| T |
6933295 |
gaaacattgatgctttgttatctacaaaaattctat |
6933330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 35335645 - 35335588
Alignment:
| Q |
83 |
ggttgcatttaatcaatttcattttcgtaagttattattggtgtctatgtgacagtgt |
140 |
Q |
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| T |
35335645 |
ggttgcatttaatcactttcattttctcaaattattactagtgtctatgtgtcagtgt |
35335588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 399 - 502
Target Start/End: Original strand, 4623277 - 4623380
Alignment:
| Q |
399 |
ttgaagaaatcctatttgttgtggtaaatcaatttgtgcaacccactgatatatgttattcaccttagaaaaatcctagtataggctaataaacaggaaa |
498 |
Q |
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||||||||||| ||| | |||||||||||||||||||||||| ||| ||||||||||| |||| | ||||||| |||||| |||||||||| ||||| |
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| T |
4623277 |
ttgaagaaatcatatctattgtggtaaatcaatttgtgcaacacacaaatatatgttatacaccatggaaaaattatagtattggctaataaaatggaaa |
4623376 |
T |
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| Q |
499 |
cata |
502 |
Q |
| |
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|||| |
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|
| T |
4623377 |
cata |
4623380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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