View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-14 (Length: 230)
Name: NF1526-2-Insertion-14
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 17813771 - 17813549
Alignment:
| Q |
8 |
ccatttggtgtatatatataggatgcatatcaagtgagaatgccatctttatataagcattgtaagaataaattttagcctttagattagatttaagggc |
107 |
Q |
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| T |
17813771 |
ccatttggtgtatatatataggatgcataccaagtgagaatgccatctttatatgagaattgtaaggataaattttagcctttagattagattttagggc |
17813672 |
T |
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| Q |
108 |
tgagattaaaaagatacgttaagtgaatcacgtgccaaatttcccaaacccacacactcgtttttggttatgctttgtgtttcttctcttcctgtctctc |
207 |
Q |
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| T |
17813671 |
tgagattaaaaagatacgttaagtgaatcacgtgccaaatttcccaaacccacacactcgtttttggttatgctttgtgtttcttctcttcctgtctctc |
17813572 |
T |
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| Q |
208 |
aaccttccacctctagcctcatc |
230 |
Q |
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| T |
17813571 |
aaccttccacctctagcctcatc |
17813549 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 8351306 - 8351368
Alignment:
| Q |
18 |
tatatatataggatgcatatcaagtgagaatgccatctttatataagcattgtaagaataaat |
80 |
Q |
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| T |
8351306 |
tatatatatagggggcatatcaagtgagaatgatatgtttatatgagaatggtaagaataaat |
8351368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 571752 - 571682
Alignment:
| Q |
18 |
tatatatataggatgcatatcaagtgagaatgccatctttatataagcattgtaagaataaattttagccttt |
90 |
Q |
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| T |
571752 |
tatatatatagg--gcatatcaagtgagaatgatatgtttatatgagaatggtaagaataaataatagccttt |
571682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 43284619 - 43284570
Alignment:
| Q |
72 |
agaataaatttt-agcctttagatta-gatttaagggctgagattaaaaa |
119 |
Q |
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| T |
43284619 |
agaataaattttcagcctttagattaagatttaatggctgagattaaaaa |
43284570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 40317132 - 40317204
Alignment:
| Q |
18 |
tatatatataggatgcatatcaagtgagaatgccatctttatataagcattgtaagaataaattttagccttt |
90 |
Q |
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| T |
40317132 |
tatatatatagggggcatatcaagtgagaatgatatttttatgtgagaatggtaagaataattttcagccttt |
40317204 |
T |
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