View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-15 (Length: 777)
Name: NF1526-2-Insertion-15
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-15 |
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| [»] scaffold0107 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 285 - 602
Target Start/End: Original strand, 33017304 - 33017621
Alignment:
| Q |
285 |
cacaattcttaaagcttttaaatgcattatccatcatcctaaagcaccagtgatcaaagaaattctatgggatcctcctcaattgaattggaccaaatgc |
384 |
Q |
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| T |
33017304 |
cacaattcttaaagcttttaaatgcattatccatcatcctaaagcaccagtgatcaaagaaattctatgggatcctcctcaattgaattggactaaatgc |
33017403 |
T |
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| Q |
385 |
aatattgatggatcctcaaatggcaatccaggtaattcaacatgtggagggatatttagggatcacaattcagatgcaatcttatgtttctcagaaccta |
484 |
Q |
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| T |
33017404 |
aatattgatggagcctcaaatggcaatccaggtaattcaacatgtggagggatatttagggatcacaattcagatgcaatcttatgtttctcagaaccta |
33017503 |
T |
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| Q |
485 |
ttggtatttgcacatcttataatcaggttgagttatgtggatttatgagagctattgaaatcattttccaaaaccaatggaacaatatatgaattgaaac |
584 |
Q |
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| T |
33017504 |
ttggtatttgcacatcttataatcaggctgagctatgtggatttatgagagctattgaaatcatttcccaaaaccaatggaacaatatatgaattgaaac |
33017603 |
T |
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| Q |
585 |
tgattcttctttagtagt |
602 |
Q |
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| T |
33017604 |
tgattcttctttagtagt |
33017621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 66 - 277
Target Start/End: Original strand, 33016377 - 33016577
Alignment:
| Q |
66 |
tcatctggtttaattcagnnnnnnnacataacatttattttatagagaccgagtcaatcagtttaatctgattcagtcacacggttcgaccattgatcca |
165 |
Q |
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| T |
33016377 |
tcatctggtttaattcagtttttgtacataacatttattttttagagaccgagtcaatcagtttaatctgattcaatgacacggttcgaccattgaccca |
33016476 |
T |
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| Q |
166 |
atgacccatcaccttcactggttcgttcactggtctggtttttaaaactatgattacagggttggaatccaacttttttaac-ggggtaaaccaaaattc |
264 |
Q |
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| T |
33016477 |
gtgatccatcacc------------ttcactagtctggtttttaaaactatgattacagggttggaatccaacttttttaacgggggtaaatcaaaattc |
33016564 |
T |
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| Q |
265 |
gctaataattcaa |
277 |
Q |
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| T |
33016565 |
gctaatatttcaa |
33016577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 33016182 - 33016229
Alignment:
| Q |
8 |
cttctcttccttggaagatctcagaagggttagatctgttggatcttg |
55 |
Q |
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| T |
33016182 |
cttctcttccttggaggatcttagaagggttagatatgttggatcttg |
33016229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 503
Target Start/End: Complemental strand, 15799898 - 15799822
Alignment:
| Q |
427 |
tgtggagggatatttagggatcacaattcagatgcaatcttatgtttctcagaacctattggtatttgcacatctta |
503 |
Q |
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| T |
15799898 |
tgtggggggatttttaggaatcataattcagatgctattttttgtttttcagatcctattggtattagcacttctta |
15799822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 46285 - 46243
Alignment:
| Q |
711 |
gagaaggaaaccgagcagctgactctttggctaaccatggtct |
753 |
Q |
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| T |
46285 |
gagaaggaaaccaagtagcagactctttggctaaccatggtct |
46243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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