View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-16 (Length: 565)
Name: NF1526-2-Insertion-16
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 7 - 565
Target Start/End: Original strand, 43439987 - 43440558
Alignment:
| Q |
7 |
acatatatatcgtgactctttataatatgagcatgtcggagattcatgtatatatcaacccaattggaaataggctttaacaaagaccaagagaggccat |
106 |
Q |
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| T |
43439987 |
acatatatattgtgactctttataatatgagcatgtcggagattcatgtatatatcaacccaattggaaataggctttaacaaagaccaagagaggtcat |
43440086 |
T |
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| Q |
107 |
tgtctcttctatgagtggtgtattgatcctgtattttgcattggtaggccgtaggcatgcgttcccttgagcttcctttgtttttcctctcttctccgtt |
206 |
Q |
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| T |
43440087 |
tgtctcttctatgagtggtgtattgatcctgtattttgcattggtagggcgtaggcatgcgttcccttgagcttcctttgtttttcctctcttctccgtt |
43440186 |
T |
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| Q |
207 |
tctctttccggtttaatgagtttgagtacccttttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactcca |
306 |
Q |
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| T |
43440187 |
tcgttttccggtttaatgagtttgagtacccttttagtgtgtgtttggatatgattttaaaaccacatcttgttaaaatatcatttcccaatgcactcca |
43440286 |
T |
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| Q |
307 |
atcatcaaaattgtgaagctgggttttatagctttaacgttgcgttgatttgctgccgtgcttttctcaattctaccatgcta-ccaaacaggccattag |
405 |
Q |
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| T |
43440287 |
atcatcaaaattgtgaaactgggttttatagctttaacgttgcggtgatttgctgccgtgcttttctcaattctaccatgctaggcaaacaggccattag |
43440386 |
T |
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| Q |
406 |
tctat------------ttctttgttaattaaaagaattgcatatatcaataatctcacactgttttttacaagacacggtgcatatatagctttattnn |
493 |
Q |
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| T |
43440387 |
tctatttatataaaatcttctttgttaattaaaagaattgcatatatcaatcatctcacactgttttttacaagacacggtgcatatatagttttattaa |
43440486 |
T |
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| Q |
494 |
nnnnnttatggtagccttctagtttctaagaaaagatgacaatgttcattaggaattaaacctcaagataag |
565 |
Q |
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| T |
43440487 |
aaaaattatggtagccttctagtttctaagaaaagatgactatgttcattaggaattaaacctcaagataag |
43440558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 247 - 404
Target Start/End: Complemental strand, 11051860 - 11051701
Alignment:
| Q |
247 |
gtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagct-gggttttatagctttaacg |
345 |
Q |
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| T |
11051860 |
gtgtttggatatgattttgaaaccacatcacgttaaaataccacttcccaatacactgtagtcctcaaaattatgaagttggggttttgaaactttagtg |
11051761 |
T |
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| Q |
346 |
tt-gcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccatta |
404 |
Q |
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| T |
11051760 |
ttggctgtgatttgctgccgtgcttttctcaattctaccgagctaccaaacagaccatta |
11051701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 34122956 - 34123122
Alignment:
| Q |
239 |
tttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagctgggttttatagc |
338 |
Q |
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| T |
34122956 |
tttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcactttccaatgcactccaatcctcaaaattgtgaagctgggttttgaagc |
34123055 |
T |
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| Q |
339 |
tttaacgttgcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccattag |
405 |
Q |
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| T |
34123056 |
tttagcgttgccgtgatttgctgctgtgcttttctcaattctaccgtgctaccaaacaggccattag |
34123122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 245 - 402
Target Start/End: Complemental strand, 48957742 - 48957585
Alignment:
| Q |
245 |
gtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagctgggttttatagctttaac |
344 |
Q |
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| T |
48957742 |
gtgtgtttggatatgattttgaaaccatatcacgttaaaatatcgcttcccaattcactccaatcctcaaaattgtgaagttgggttttgaagctttagc |
48957643 |
T |
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| Q |
345 |
gttgcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccat |
402 |
Q |
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| T |
48957642 |
gttgccgtgatttccttccgtccttttctcaattctaccgtgctaccaaacatgccat |
48957585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 254 - 394
Target Start/End: Original strand, 40490333 - 40490470
Alignment:
| Q |
254 |
gatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatc-aaaattgtgaagctgggttttatagctttaacgttgcgtt |
352 |
Q |
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| T |
40490333 |
gatatgattttgaaaccacaccacgttaaaataccactttccaatgcactccaatcctcaaaaattttgaagctgggtgttgaagctttagcattgccat |
40490432 |
T |
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| Q |
353 |
gatttgctgccgtgcttttctcaattctaccatgctaccaaa |
394 |
Q |
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| T |
40490433 |
gatttg----cgtgcttttctcaattctaccgtgctatcaaa |
40490470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 4124078 - 4124001
Alignment:
| Q |
248 |
tgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagc |
325 |
Q |
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| T |
4124078 |
tgtttggatgtgagtttgaaaccacatcatgttgcaatatcgtgtcccaaagcactcgaaccatgaaaattgtgaagc |
4124001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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