View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-3 (Length: 430)
Name: NF1526-2-Insertion-3
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 263 - 426
Target Start/End: Original strand, 38505389 - 38505552
Alignment:
| Q |
263 |
gcgacgtgtccatacatttaaatatgtaatgttaatttttaaattattgtttaaatttgtaatagaatgaagttgatatgtcaatctaaacctcaaacta |
362 |
Q |
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| T |
38505389 |
gcgacgtgtccatatatttaaatatgtaatgttaatttttaaattattgtttaaatttgtaatagaatgaagttgatatgtcaatctaaacctcaaacta |
38505488 |
T |
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| Q |
363 |
caagcatatcaaacaacatgtactaaaacgatgaaacacaacactgcactcggacaacaaagtt |
426 |
Q |
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| T |
38505489 |
caagtatatcaaacaacatgtattaaaacgatgaaacacaacactgcactcggacaataaagtt |
38505552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 38505104 - 38505205
Alignment:
| Q |
8 |
actgcatgcctcttgctgtacatttctacatttcgaaggccaaatctgaatgaaatgttgtctgtttctgcaactcttatcagtggaatgcagtgcatta |
107 |
Q |
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| T |
38505104 |
actgcatgcctcttgctgtacatttctacatttcgaaggccaaatctgaatgaaatgttgtctgtttctgcaactcttatcagtggaatgcagtgcatta |
38505203 |
T |
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| Q |
108 |
tg |
109 |
Q |
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|| |
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| T |
38505204 |
tg |
38505205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 38073148 - 38073107
Alignment:
| Q |
313 |
ttaaatttgtaatagaatgaagttgatatgtcaatctaaacc |
354 |
Q |
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| T |
38073148 |
ttaaatttataatagattgaagttgatatgtcaatctaaacc |
38073107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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