View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1526-2-Insertion-4 (Length: 711)
Name: NF1526-2-Insertion-4
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-4 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 108 - 711
Target Start/End: Complemental strand, 41033652 - 41033045
Alignment:
| Q |
108 |
tattcataaacactcatacttctttatttatatctctacgtttctgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct |
207 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41033652 |
tattcattaagactcatacttctttatttatatctctacgtttctgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct |
41033553 |
T |
|
| Q |
208 |
tgtataggagaagaaaagcaccagtcaagaccaaagaagcatttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacaatcagggctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
41033552 |
tgtataggagaagaaaagcaccagtcaagaccaaagaagcatttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacactcagagctt |
41033453 |
T |
|
| Q |
308 |
cactccctttttctctcttccctctcctgctgatttttgagattgttgcttcttggttggaagctttcttcttagtttgaggagaaaatatatattgtca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41033452 |
cactccctttttctctcttccctctcctgctgattttggagattgttgcttcttggttggaagctttcttcttagtttgaggagaaaatatatattgtca |
41033353 |
T |
|
| Q |
408 |
taggatatttaaggtttaattaatacttgtgnnnnnnnnnnnnnnnnnnncaactttaggataacacgtttatattatttgaatcacaatattgcaaaat |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
41033352 |
taggatatttaaggtttaattaatacttgtgttttttattttatatatttcaactttaggataacacgtttacatcatttgaatcacaatattgcaaaat |
41033253 |
T |
|
| Q |
508 |
ttaatagtatatgattgatgtta------nnnnnnnnnnnnnngaagtacgatgttatttgtttgttgtatatttggaatagcattaatgtgatttgcat |
601 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41033252 |
ttaa---tatatgattgatgttatttttttttattttttttttgaagtacgatgttatttgtttgttgtatatttggaatagcattaatgtgatttgcat |
41033156 |
T |
|
| Q |
602 |
gtcaatgagtaaggagtgaggacttttctggtgcaagtcatgtttagataaatagtttaactttaattaag-gcttatgtatatgctagttctagaacaa |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
41033155 |
gtcaatgagtaaggagtgaggacttttctggtgcaagtcatgtttagataaatagtttaactttaattaagtgcttatgtataagctatttctataacaa |
41033056 |
T |
|
| Q |
701 |
aagatgaaaat |
711 |
Q |
| |
|
||||| ||||| |
|
|
| T |
41033055 |
aagataaaaat |
41033045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 152 - 431
Target Start/End: Complemental strand, 41040244 - 41039980
Alignment:
| Q |
152 |
tgttatatttgtcgatgtgggatgtttaattatacacttcaaagacaaagttttct--tgtataggagaagaaaagcaccagtcaagaccaaagaagcat |
249 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||||||| ||| || ||||||| ||||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
41040244 |
tgttatagttgtccatgtgggacgtttagttatacactcatgagaaaaggttttctcttgtataggagaagaaaaacactagggaagaccaaagaagcat |
41040145 |
T |
|
| Q |
250 |
ttttcaattttcacgagtgagccaaaagtaaagaacagttctcacacaatcagggcttcactccctttttctctcttccctctcctgctgatttttgaga |
349 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| || |||| | || | ||||||||||||||||||| |||| |
|
|
| T |
41040144 |
ttttcaattttcacgaatgagccaaaagtaaagaacaactctcacgcactcagaacatcgc---------------tccctctcctgctgattttggaga |
41040060 |
T |
|
| Q |
350 |
ttgttgcttcttggttggaagctttcttcttagtttgaggagaaaatatatattgtcataggatatttaaggtttaattaat |
431 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||| ||||||| || |||||||||| ||||| |||||| |||||||| |
|
|
| T |
41040059 |
ttgttgcctcttggttggatg-tttcttcttagtttgaagagaaaagatctattgtcata-gatatataaggtctaattaat |
41039980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 39962468 - 39962419
Alignment:
| Q |
463 |
ttaggataacacgtttatattatttgaatcacaatattgcaaaatttaat |
512 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
39962468 |
ttaggataacacatttatataatttgcatcacaatattgcaaaatttaat |
39962419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 607
Target Start/End: Complemental strand, 41039882 - 41039827
Alignment:
| Q |
552 |
gatgttatttgtttgttgtatatttggaatagcattaatgtgatttgcatgtcaat |
607 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
41039882 |
gatgttatttgtttgttgttaatttggaattacattaatgtgatttgcttgtcaat |
41039827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 510
Target Start/End: Original strand, 43617239 - 43617291
Alignment:
| Q |
458 |
caactttaggataacacgtttatattatttgaatcacaatattgcaaaattta |
510 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
43617239 |
caactttaggataacacatttatatccattgcatcacaatattgcaaaattta |
43617291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 2768234 - 2768163
Alignment:
| Q |
319 |
tctctcttccctctcctgctgatttttgagat----tgttgcttcttggttggaagctttcttcttagtttga |
387 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
2768234 |
tctctcttccctctcctcgtgattttggagatgtgttgttgcctcttggttggaagc-ttcttcttagtttga |
2768163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University