View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1526-2-Insertion-5 (Length: 525)

Name: NF1526-2-Insertion-5
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1526-2-Insertion-5
NF1526-2-Insertion-5
[»] chr1 (22 HSPs)
chr1 (8-450)||(2466041-2466483)
chr1 (451-525)||(26882837-26882911)
chr1 (451-525)||(45318459-45318533)
chr1 (452-525)||(52705393-52705466)
chr1 (451-525)||(36402246-36402320)
chr1 (448-525)||(1928415-1928492)
chr1 (452-525)||(9831299-9831372)
chr1 (452-494)||(34772311-34772353)
chr1 (451-525)||(42657713-42657787)
chr1 (448-525)||(10896796-10896873)
chr1 (454-502)||(29208757-29208805)
chr1 (452-494)||(19007621-19007663)
chr1 (452-525)||(27198271-27198344)
chr1 (451-494)||(14229094-14229137)
chr1 (451-494)||(48194589-48194632)
chr1 (451-494)||(48203347-48203390)
chr1 (453-494)||(14555353-14555394)
chr1 (450-487)||(52179740-52179777)
chr1 (447-502)||(33243344-33243400)
chr1 (447-502)||(33263517-33263573)
chr1 (450-494)||(39881202-39881246)
chr1 (444-496)||(52177233-52177285)
[»] chr8 (21 HSPs)
chr8 (446-525)||(43605375-43605454)
chr8 (451-525)||(1606024-1606098)
chr8 (452-525)||(2112791-2112864)
chr8 (451-525)||(29260287-29260361)
chr8 (451-525)||(42274971-42275045)
chr8 (456-525)||(7148050-7148119)
chr8 (452-524)||(28619843-28619915)
chr8 (451-525)||(9457542-9457616)
chr8 (451-525)||(40265292-40265366)
chr8 (447-525)||(35142037-35142115)
chr8 (451-525)||(41386881-41386956)
chr8 (451-525)||(4655046-4655120)
chr8 (451-525)||(10802782-10802856)
chr8 (448-502)||(40013504-40013558)
chr8 (445-502)||(9209029-9209086)
chr8 (451-501)||(30382709-30382759)
chr8 (451-494)||(17790435-17790478)
chr8 (467-525)||(4302819-4302877)
chr8 (451-512)||(37567387-37567448)
chr8 (451-494)||(42366049-42366092)
chr8 (451-494)||(43488905-43488948)
[»] chr3 (21 HSPs)
chr3 (451-525)||(26555813-26555887)
chr3 (451-525)||(36055018-36055092)
chr3 (451-524)||(26005995-26006068)
chr3 (452-525)||(50900458-50900531)
chr3 (453-525)||(35730933-35731005)
chr3 (450-525)||(24150843-24150918)
chr3 (450-525)||(38629811-38629886)
chr3 (451-525)||(13662547-13662621)
chr3 (451-525)||(19552159-19552233)
chr3 (451-525)||(30588838-30588912)
chr3 (452-525)||(38682426-38682499)
chr3 (454-525)||(26293578-26293649)
chr3 (451-525)||(52024210-52024285)
chr3 (450-494)||(45926991-45927035)
chr3 (447-524)||(46252215-46252293)
chr3 (451-525)||(53184084-53184158)
chr3 (454-525)||(27593154-27593225)
chr3 (450-525)||(36785969-36786044)
chr3 (452-494)||(10067726-10067768)
chr3 (464-525)||(10105025-10105086)
chr3 (464-525)||(10225801-10225862)
[»] chr2 (16 HSPs)
chr2 (452-525)||(29940945-29941018)
chr2 (458-525)||(45546937-45547004)
chr2 (451-524)||(6289511-6289584)
chr2 (451-525)||(20157768-20157842)
chr2 (451-525)||(11534834-11534908)
chr2 (452-512)||(25343220-25343280)
chr2 (463-502)||(11998451-11998490)
chr2 (451-494)||(14920623-14920666)
chr2 (451-494)||(21736647-21736690)
chr2 (451-525)||(34028944-34029018)
chr2 (453-525)||(2372970-2373042)
chr2 (451-494)||(2288460-2288503)
chr2 (450-494)||(17330895-17330940)
chr2 (450-494)||(7488171-7488215)
chr2 (477-525)||(24193574-24193622)
chr2 (450-494)||(44914583-44914627)
[»] chr4 (21 HSPs)
chr4 (450-525)||(8584016-8584091)
chr4 (451-524)||(42218416-42218489)
chr4 (451-525)||(44929876-44929950)
chr4 (451-502)||(35261614-35261665)
chr4 (451-521)||(8880443-8880512)
chr4 (451-524)||(33450149-33450222)
chr4 (451-494)||(25935785-25935828)
chr4 (446-493)||(41761973-41762020)
chr4 (450-525)||(54509712-54509787)
chr4 (451-509)||(3435979-3436037)
chr4 (451-521)||(7820095-7820165)
chr4 (451-525)||(40143775-40143849)
chr4 (455-525)||(52109409-52109479)
chr4 (454-502)||(26336079-26336127)
chr4 (447-494)||(28847144-28847192)
chr4 (451-502)||(45332665-45332716)
chr4 (451-494)||(56397442-56397485)
chr4 (448-502)||(47685140-47685194)
chr4 (451-494)||(28100625-28100668)
chr4 (451-494)||(38230771-38230814)
chr4 (463-502)||(42720730-42720769)
[»] scaffold0016 (1 HSPs)
scaffold0016 (451-525)||(81793-81867)
[»] chr7 (13 HSPs)
chr7 (451-525)||(151857-151931)
chr7 (451-525)||(27418653-27418727)
chr7 (451-524)||(47915069-47915142)
chr7 (456-524)||(30110807-30110875)
chr7 (459-514)||(43057703-43057758)
chr7 (451-525)||(40097093-40097167)
chr7 (468-525)||(35090117-35090174)
chr7 (451-488)||(43057836-43057873)
chr7 (451-494)||(12253433-12253476)
chr7 (451-494)||(33474517-33474560)
chr7 (452-494)||(31494239-31494281)
chr7 (448-494)||(39301288-39301334)
chr7 (452-525)||(3634213-3634286)
[»] chr5 (10 HSPs)
chr5 (451-525)||(40410589-40410663)
chr5 (454-525)||(10571113-10571184)
chr5 (451-525)||(6828803-6828877)
chr5 (455-525)||(17518431-17518501)
chr5 (452-522)||(27786210-27786280)
chr5 (454-494)||(6902693-6902733)
chr5 (450-493)||(3604496-3604539)
chr5 (451-494)||(39753434-39753477)
chr5 (452-494)||(7857025-7857067)
chr5 (464-525)||(26795644-26795705)
[»] scaffold0237 (1 HSPs)
scaffold0237 (451-525)||(21424-21498)
[»] chr6 (10 HSPs)
chr6 (451-525)||(29834296-29834370)
chr6 (451-525)||(29865730-29865804)
chr6 (451-524)||(6476725-6476798)
chr6 (451-525)||(3110296-3110370)
chr6 (451-525)||(30877851-30877925)
chr6 (447-525)||(10644025-10644103)
chr6 (456-494)||(11007724-11007762)
chr6 (451-494)||(5957125-5957168)
chr6 (451-494)||(7100163-7100206)
chr6 (451-494)||(8794424-8794467)
[»] scaffold0153 (1 HSPs)
scaffold0153 (451-525)||(34813-34887)
[»] scaffold0287 (1 HSPs)
scaffold0287 (452-525)||(11799-11872)


Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Complemental strand, 2466483 - 2466041
Alignment:
Q  8 ttttgagggaaagaggtgttatgtatgctgagtttgtgaagaggaaaggggtgaaagaggtgaatgttgttgaggctgaagaagagaaacatgtgtttca 107  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466483 ttttgaaggaaagaggtgttatgtatgctgagtttgtgaagaagaaaggggtgaaagaggtgaatgttgttgaggctgaagaagagaaacatgtgtttca 2466384  T
Q  108 cgttttctatcctgaatctgatgcaactaggttgcttcaaagccaaatgagtcagttcatgaagaaatgtttgcattagtgtgtttgcttctgacaatta 207  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466383 cgttttttatcctgaatctgatgcaactaggttgcttcaaaaccaaatgagtcagttcatgaagaaatgtttgcattagtgtgtttgcttctgacaatta 2466284  T
Q  208 gaaattcattcaaaataaaaaaggattgttattgtgttaagtaacttttgtttgtattcgcaatttggcataattgatagatgcgttggggctttaattt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466283 gaaattcattcaaaataaaaaaggattgttattgtgttaagtaacttttgcttgtattcgcaatttggcataattgatagatgcgttggggctttaattt 2466184  T
Q  308 tttggtgctactgcctaaaataaaaatattgcattagctttagtttccatcctccatttttatattgcatgttgctggttaaattcggatatgaattatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2466183 tttggtgctactgcctaaaataaaaatattgcattagctttagtttccatcctccatttttatattgcatgttgctggttaaattcggatatgaattatg 2466084  T
Q  408 tgcaccatgtagatttgaactttatatgcaaaatggtatttta 450  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  2466083 tgcaccatgtagatttgaactttatatgcaaaatggtagttta 2466041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 26882911 - 26882837
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||    
T  26882911 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgttattcaatc 26882837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 45318459 - 45318533
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||    
T  45318459 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttctggtattcaatc 45318533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 52705393 - 52705466
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||  |||||||||||||| |||||||||||| |||| ||||||||| ||||||||| ||||||||||    
T  52705393 gggtgtattcaattgagatttcaaaagattttaaaagatttttttgttttataaaagtcttgtggtattcaatc 52705466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 36402246 - 36402320
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  36402246 ggggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 36402320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 525
Target Start/End: Complemental strand, 1928492 - 1928415
Alignment:
Q  448 ttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  1928492 ttaggggtgtattcaattgagattttaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 1928415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 9831299 - 9831372
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  9831299 gggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 9831372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 34772311 - 34772353
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  34772311 gggtgtattggattgtgatttcaaaggattttaaaagactttt 34772353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 42657713 - 42657787
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||  |||||||||||||||||   || || | ||||||||| ||||||||||    
T  42657713 ggggtgtattggattgagatttcaagagattttaaaagactttttaattataaaaaagtcttgtggtattcaatc 42657787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 525
Target Start/End: Original strand, 10896796 - 10896873
Alignment:
Q  448 ttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||| | ||||| | |||||||   ||||||||||    
T  10896796 ttaggggtgtattcaattgagatttcaaaggattttaaaagatttttttattttaaaaaagtctttaggtattcaatc 10896873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 29208757 - 29208805
Alignment:
Q  454 gtgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||    
T  29208757 gtgtattcaattgagatttcaaaggattttaaaagacttttttgtttta 29208805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 494
Target Start/End: Complemental strand, 19007663 - 19007621
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  19007663 gggtgtattgaattgagatttcaagggattttaaaagactttt 19007621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 27198271 - 27198344
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttt-tatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||| || || |||||||||||||||||| ||||| || | ||||||||| ||||||||||    
T  27198271 gggtgtattggattgagactttaagggattttaaaagactttt-tgtttataaaaaagtcttgtggtattcaatc 27198344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Complemental strand, 14229137 - 14229094
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||    
T  14229137 ggggtgtatttgattgtgatttcaagggattttaaaagactttt 14229094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 48194589 - 48194632
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||    
T  48194589 ggggtgtattgaattgggatttcaagggattttaaaagactttt 48194632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 48203347 - 48203390
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||    
T  48203347 ggggtgtattgaattgggatttcaagggattttaaaagactttt 48203390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 494
Target Start/End: Complemental strand, 14555394 - 14555353
Alignment:
Q  453 ggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||||||  |||| |||||||||||||||||||||    
T  14555394 ggtgtattggattgtaatttaaaaggattttaaaagactttt 14555353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 487
Target Start/End: Complemental strand, 52179777 - 52179740
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaa 487  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  52179777 agggatgtattggatcgagatttcaaaggattttaaaa 52179740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 33243400 - 33243344
Alignment:
Q  447 tttagggg-tgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||||||| ||||||  ||||| |||||||| ||||||||||||||||| |||||||    
T  33243400 tttaggggatgtattcaattgaaatttcaaaagattttaaaagacttttttgtttta 33243344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 447 - 502
Target Start/End: Complemental strand, 33263573 - 33263517
Alignment:
Q  447 tttagggg-tgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||||||| ||||||  ||||| |||||||| ||||||||||||||||| |||||||    
T  33263573 tttaggggatgtattcaattgaaatttcaaaagattttaaaagacttttttgtttta 33263517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 39881246 - 39881202
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||| ||| ||| |||||| |||||||||||||||||    
T  39881246 aggggtgtattgaattaagacttcaaatgattttaaaagactttt 39881202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 444 - 496
Target Start/End: Original strand, 52177233 - 52177285
Alignment:
Q  444 tattttaggggtgtattggattgagatttcaaaggattttaaaagacttttgt 496  Q
    ||||| || |||||||| |||||| |||| ||| |||||||||||||||||||    
T  52177233 tatttaagtggtgtattagattgaaattttaaatgattttaaaagacttttgt 52177285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 446 - 525
Target Start/End: Complemental strand, 43605454 - 43605375
Alignment:
Q  446 ttttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  43605454 ttttaggggggtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 43605375  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 1606098 - 1606024
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  1606098 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 1606024  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 2112791 - 2112864
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  2112791 gggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 2112864  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 29260361 - 29260287
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  29260361 ggggtgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 29260287  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 42274971 - 42275045
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||    
T  42274971 ggggtgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtggtattcaatc 42275045  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 456 - 525
Target Start/End: Original strand, 7148050 - 7148119
Alignment:
Q  456 gtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  7148050 gtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 7148119  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 452 - 524
Target Start/End: Original strand, 28619843 - 28619915
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||    
T  28619843 gggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagttttgtggtattcaat 28619915  T

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Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 9457542 - 9457616
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  9457542 ggggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatc 9457616  T

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Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 40265366 - 40265292
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||    
T  40265366 ggggtgtattggattgaaatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatc 40265292  T

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Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 447 - 525
Target Start/End: Original strand, 35142037 - 35142115
Alignment:
Q  447 tttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||  |||||| | ||||||||| ||||||||||    
T  35142037 tttaggggtgtattggattgagattttaatggattttaaaagactttttcgttttaaaaaagtcttgtggtattcaatc 35142115  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 41386956 - 41386881
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaaga-cttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||| ||||||||||||  |||| ||||||||| ||||||||| ||||||||||    
T  41386956 ggggtgtattggattgagatttcaaaagattttaaaagattttttttgttttataaaagtcttgtggtattcaatc 41386881  T

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Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 4655046 - 4655120
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||| ||||||||| ||||| ||||    
T  4655046 ggggtgtattggattgagatttcaaagaattttaaaagatttttttgtttaataaaagtcttgtggtatttaatc 4655120  T

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Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 10802856 - 10802782
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||| ||||||||||||||  |||||||||||||||| | ||||||| ||||||| | ||||||||||    
T  10802856 ggggtgtattgaattgagatttcaaataattttaaaagacttttttattttataaaagtcttctggtattcaatc 10802782  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 448 - 502
Target Start/End: Complemental strand, 40013558 - 40013504
Alignment:
Q  448 ttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  40013558 ttaggggtgtattggatggagatttcaaagaattttaaaagacttttttgtttta 40013504  T

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Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 9209029 - 9209086
Alignment:
Q  445 attttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||| |||||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  9209029 atttaaggggtgtattgaattgagatttcaaagaattttaaaagacttttttgtttta 9209086  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 501
Target Start/End: Complemental strand, 30382759 - 30382709
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgtttt 501  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  30382759 ggggtgtattcaattgagatttcaaaggattttaaaagacttttttgtttt 30382709  T

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Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 17790435 - 17790478
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  17790435 ggggtgtattggattgagatttcaagagattttaaaagactttt 17790478  T

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Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 525
Target Start/End: Complemental strand, 4302877 - 4302819
Alignment:
Q  467 agatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  4302877 agatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 4302819  T

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Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 512
Target Start/End: Complemental strand, 37567448 - 37567387
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtctt 512  Q
    ||||||||||  |||||||||||||| |||||||||||| |||| ||||||| | |||||||    
T  37567448 ggggtgtattcaattgagatttcaaaagattttaaaagatttttttgttttaaaaaagtctt 37567387  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 42366049 - 42366092
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||||||| |||||||||| ||||||||||| ||||    
T  42366049 ggggtgtattggattgtgatttcaaagcattttaaaagattttt 42366092  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 43488905 - 43488948
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||    
T  43488905 ggggtgtattgaattgaaatttcaaaggattttaatagactttt 43488948  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 26555813 - 26555887
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  26555813 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 26555887  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 36055092 - 36055018
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  36055092 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 36055018  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 26006068 - 26005995
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  26006068 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtaatattcaat 26005995  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 452 - 525
Target Start/End: Complemental strand, 50900531 - 50900458
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  50900531 gggtgtattggattaagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 50900458  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 453 - 525
Target Start/End: Original strand, 35730933 - 35731005
Alignment:
Q  453 ggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||  |||||||||    
T  35730933 ggtgtattggattgagatttcaaaggattttaaaagatttttttgttttataaaagtcttgtgatattcaatc 35731005  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 525
Target Start/End: Complemental strand, 24150918 - 24150843
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||| ||||||||||    
T  24150918 aggggtatattggattgagatttcaaaggattttaaaagatttttttgttttataaaaatcttgtggtattcaatc 24150843  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 525
Target Start/End: Complemental strand, 38629886 - 38629811
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||| ||||||||||  |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  38629886 aggggtgtattggattaagatttcaaataattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 38629811  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 13662547 - 13662621
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |||||| || ||||||||||    
T  13662547 ggggtgtattggattgagatttcaaagaattttaaaagacttttttgttttacaaaagtctcgtggtattcaatc 13662621  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 19552233 - 19552159
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||| |||||||||||||||| |||| | ||||||| ||||||||| ||||||||||    
T  19552233 ggggtgtattggattgagattttaaaggattttaaaagatttttttattttataaaagtcttgtggtattcaatc 19552159  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 30588838 - 30588912
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||| |||||| |||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  30588838 ggggtgtattagattgaaattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 30588912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 38682426 - 38682499
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||| | || |||||| ||||||||||    
T  38682426 gggtgtattgtattgagatttcaaaggattttaaaagacttttttgttttaaaaaaatcttgtggtattcaatc 38682499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 454 - 525
Target Start/End: Complemental strand, 26293649 - 26293578
Alignment:
Q  454 gtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||    
T  26293649 gtgtattgaattgaaatttcaaaggattttaaaagacttttttgttttataaaagttttgtggtattcaatc 26293578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 52024285 - 52024210
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgtttt-atagaagtcttgttgtattcaatc 525  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||| ||||||||||    
T  52024285 ggggtgcattggattgagatttcaaaggattttaaaagacttttttgttttaaaaaaagtcttgtggtattcaatc 52024210  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 45927035 - 45926991
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  45927035 aggggtgtattggattgagattttaaaggattttaaaagactttt 45926991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 447 - 524
Target Start/End: Complemental strand, 46252293 - 46252215
Alignment:
Q  447 tttagggg-tgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    |||||||| |||||||||||||||||| ||| |||||||||||| |||| ||||||| | |||||| || |||||||||    
T  46252293 tttaggggatgtattggattgagattttaaatgattttaaaagatttttttgttttaaacaagtctcgtggtattcaat 46252215  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 53184158 - 53184084
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||| ||||| ||||||||||||| ||||||||||||| |||| ||||||| | |||||| || ||||||||||    
T  53184158 ggggtctattgaattgagatttcaatggattttaaaagatttttttgttttaaaaaagtctcgtggtattcaatc 53184084  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 454 - 525
Target Start/End: Original strand, 27593154 - 27593225
Alignment:
Q  454 gtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||  ||||||||||||||||||||||||||| |||| ||||||| | |||||||   ||||||||||    
T  27593154 gtgtattcaattgagatttcaaaggattttaaaagatttttttgttttaaaaaagtctttaggtattcaatc 27593225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 525
Target Start/End: Original strand, 36785969 - 36786044
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||| ||||  |||||||||| ||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  36785969 aggggtatatttaattgagattttaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 36786044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 494
Target Start/End: Complemental strand, 10067768 - 10067726
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||| ||||||||||||| ||||||||||||||||||    
T  10067768 gggtgtattgaattgagatttcaagggattttaaaagactttt 10067726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 10105086 - 10105025
Alignment:
Q  464 ttgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||| |||||||||||||||||| | || || | || |||||| ||||||||||    
T  10105086 ttgagatttcaagggattttaaaagacttttttattataaaaaaatcttgtggtattcaatc 10105025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 10225862 - 10225801
Alignment:
Q  464 ttgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||| |||||||||||||||||| | || || | |||||||||  |||||||||    
T  10225862 ttgagatttcaagggattttaaaagacttttttattataaaaaagtcttgtgctattcaatc 10225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 29940945 - 29941018
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  29940945 gggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 29941018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 458 - 525
Target Start/End: Original strand, 45546937 - 45547004
Alignment:
Q  458 attggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  45546937 attggattgagatttcaaagaattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 45547004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 6289584 - 6289511
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||  ||||||||    
T  6289584 ggggtgtattggattgagatttcaaaggattttaaaaaacttttttgttttataaaagttttgtgatattcaat 6289511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 20157842 - 20157768
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||| |||||||||   ||||||||||    
T  20157842 ggggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaagaagtctttaggtattcaatc 20157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 11534834 - 11534908
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  11534834 ggggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 11534908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 25343220 - 25343280
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtctt 512  Q
    |||||||||  |||||||||| ||||||||||||||||||||| ||||||| | |||||||    
T  25343220 gggtgtattcaattgagattttaaaggattttaaaagacttttttgttttaaaaaagtctt 25343280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 502
Target Start/End: Complemental strand, 11998490 - 11998451
Alignment:
Q  463 attgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11998490 attgagatttcaaaggattttaaaagacttttttgtttta 11998451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 494
Target Start/End: Complemental strand, 14920666 - 14920623
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  14920666 ggggtgtattggattgtgattttaaaggattttaaaagactttt 14920623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 494
Target Start/End: Complemental strand, 21736690 - 21736647
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  21736690 ggggtgtattgaattgagatttcaaaggattttaatagactttt 21736647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 34029018 - 34028944
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  | ||| |||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  34029018 ggggtgtattcaactgatatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 34028944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 525
Target Start/End: Original strand, 2372970 - 2373042
Alignment:
Q  453 ggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||| |||| |||||| |||||||||||||||||||| |||| || | || |||||  ||||||||||    
T  2372970 ggtgtattgaattgggatttcgaaggattttaaaagacttttttgttatagaaaaatcttgaggtattcaatc 2373042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 2288460 - 2288503
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  2288460 ggggtgtattgaattgagaattcaagggattttaaaagactttt 2288503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 17330940 - 17330895
Alignment:
Q  450 aggggtgtattggattgagatttcaa-aggattttaaaagactttt 494  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||||    
T  17330940 aggggtgtattgaattgagaattcaagaggattttaaaagactttt 17330895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 7488215 - 7488171
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||| ||||||||||||||  ||||||| ||||||||    
T  7488215 aggggtgtattgaattgagatttcaaataattttaatagactttt 7488171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 24193574 - 24193622
Alignment:
Q  477 ggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||| ||||||| | ||||||||  ||||||||||    
T  24193574 ggattttaaaagacttttttgttttaaaaaagtcttggggtattcaatc 24193622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 44914583 - 44914627
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||| | ||||||| ||||| ||||||||||||||||||    
T  44914583 aggggtgtatggaattgagaattcaatggattttaaaagactttt 44914627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 450 - 525
Target Start/End: Complemental strand, 8584091 - 8584016
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||    
T  8584091 aggggtgtattggattgagatttcaaaggattttaaaagacttttttattttataaaagtcttgtggtattcaatc 8584016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 42218489 - 42218416
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||    
T  42218489 ggggtgtattggattgagatttcaaaggattttaaaaaacttttttgttttataaaagtcttgtggtattcaat 42218416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 44929876 - 44929950
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||| ||| |||||||||| |||||| ||||||||| ||||||||| ||||||||||    
T  44929876 ggggtgtattggattgagattttaaaagattttaaaatacttttttgttttataaaagtcttgtggtattcaatc 44929950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 35261614 - 35261665
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35261614 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgtttta 35261665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 8880443 - 8880512
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattc 521  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || |||||| ||||||    
T  8880443 ggggtgtattggatt-agatttcaaaggattttaaaagacttttttgttttataaaaatcttgtggtattc 8880512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 33450222 - 33450149
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  |||||| | ||||| ||| |||||||||    
T  33450222 ggggtgtattggattgagatttcaatggattttaaaagactttttcgttttaaaaaagtcgtgtagtattcaat 33450149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 25935785 - 25935828
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25935785 ggggtgtattggattgagatttcaaaggattttaaaagactttt 25935828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 446 - 493
Target Start/End: Original strand, 41761973 - 41762020
Alignment:
Q  446 ttttaggggtgtattggattgagatttcaaaggattttaaaagacttt 493  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41761973 ttttaggggtgtattggattgagattttaaaggattttaaaagacttt 41762020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 450 - 525
Target Start/End: Original strand, 54509712 - 54509787
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  54509712 aggggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 54509787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 509
Target Start/End: Complemental strand, 3436037 - 3435979
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagt 509  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  3436037 ggggtttattggattgagattttaaaggattttaaaagacttttttgttttataaaagt 3435979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 521
Target Start/End: Original strand, 7820095 - 7820165
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattc 521  Q
    ||||| |||||||||||||||||||| ||||||||||||||| | ||||||||| |||| |||| ||||||    
T  7820095 ggggtatattggattgagatttcaaatgattttaaaagacttatttgttttataaaagttttgtggtattc 7820165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 40143775 - 40143849
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  |||||||||||||| ||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  40143775 ggggtgtattcaattgagatttcaaaagattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 40143849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 455 - 525
Target Start/End: Original strand, 52109409 - 52109479
Alignment:
Q  455 tgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||| |||| |||||| |||| |||||||||||||||| ||||||||| || |||||| ||||||||||    
T  52109409 tgtattagatttagattttaaagtattttaaaagacttttttgttttataaaaatcttgtggtattcaatc 52109479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 502
Target Start/End: Original strand, 26336079 - 26336127
Alignment:
Q  454 gtgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||||||  |||||||||||||||||||||||||||||||| |||||||    
T  26336079 gtgtattcaattgagatttcaaaggattttaaaagacttttttgtttta 26336127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 494
Target Start/End: Complemental strand, 28847192 - 28847144
Alignment:
Q  447 tttagggg-tgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||    
T  28847192 tttaggggatgtattggattgagattttaaaggattttaaaagactttt 28847144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 502
Target Start/End: Original strand, 45332665 - 45332716
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    ||||||||||  ||||||||||||||| |||||||||||||||| |||||||    
T  45332665 ggggtgtattcaattgagatttcaaagaattttaaaagacttttttgtttta 45332716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 56397442 - 56397485
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  56397442 ggggtgtattgaattgagatttcaaaggattttaatagactttt 56397485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 47685140 - 47685194
Alignment:
Q  448 ttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||| ||||||||  |||||||||||||| ||||||||||||||||| |||||||    
T  47685140 ttagaggtgtattcaattgagatttcaaaagattttaaaagacttttttgtttta 47685194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Complemental strand, 28100668 - 28100625
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||||||| |||||||| || |||||||||||||||    
T  28100668 ggggtgtattggattgggatttcaaggggttttaaaagactttt 28100625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 38230771 - 38230814
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||    
T  38230771 ggggtgtattgaattgggatttcaagggattttaaaagactttt 38230814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 502
Target Start/End: Original strand, 42720730 - 42720769
Alignment:
Q  463 attgagatttcaaaggattttaaaagacttttgtgtttta 502  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  42720730 attgagattttaaaggattttaaaagacttttttgtttta 42720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 81867 - 81793
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  81867 ggggtgtattggattgagattttaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 81793  T

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Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 151857 - 151931
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||    
T  151857 ggggtgtattggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtgatattcaatc 151931  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 27418727 - 27418653
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  27418727 ggggtgtactggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 27418653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 47915142 - 47915069
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||||||||    
T  47915142 ggggtgtattggattgagatttcataggattttaaaagacttttttgttttataaaagtcttgtggtattcaat 47915069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 30110807 - 30110875
Alignment:
Q  456 gtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||    
T  30110807 gtattggattgagatttcaaagaattttaaaagacttttttgttttataaaagtcttgtagtattcaat 30110875  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 43057758 - 43057703
Alignment:
Q  459 ttggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgt 514  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  43057758 ttggattgagatttcaaaggattttaaaagacttttttgttttataaaagtcttgt 43057703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 40097093 - 40097167
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  40097093 ggggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 40097167  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 525
Target Start/End: Complemental strand, 35090174 - 35090117
Alignment:
Q  468 gatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||  ||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  35090174 gatttcaatagattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 35090117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 488
Target Start/End: Complemental strand, 43057873 - 43057836
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaag 488  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43057873 ggggtgtattggattgagatttcaaaggattttaaaag 43057836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 494
Target Start/End: Complemental strand, 12253476 - 12253433
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  12253476 ggggtgtattgaattgagatttcaaaggattttaatagactttt 12253433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 33474517 - 33474560
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  33474517 ggggtgtattgaattgagatttcaaaggattttaatagattttt 33474560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 31494239 - 31494281
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||||||| |||||  ||||||||||||||||||||    
T  31494239 gggtgtattggattgggatttggaaggattttaaaagactttt 31494281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 494
Target Start/End: Complemental strand, 39301334 - 39301288
Alignment:
Q  448 ttaggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||| ||||||||  |||||||||||||| |||||||||||||||||    
T  39301334 ttagaggtgtattcaattgagatttcaaaagattttaaaagactttt 39301288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 3634213 - 3634286
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||  |||||| | |||||||||||||||||| | || || | |||||||||  |||||||||    
T  3634213 gggtgtattggattcggatttctagggattttaaaagacttttttattataaaaaagtcttgtgatattcaatc 3634286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 40410589 - 40410663
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  40410589 ggggtgtattggattgagatttcaatggattttaaaagacttttttgttttataaaagtcttgtggtattcaatc 40410663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 454 - 525
Target Start/End: Original strand, 10571113 - 10571184
Alignment:
Q  454 gtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||| ||||||||||| ||||||  |||||||| |||||||||  |||||||||    
T  10571113 gtgtattggattgagatttcaatggattttaaaaaactttttcgttttataaaagtcttgtgatattcaatc 10571184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 6828877 - 6828803
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  6828877 ggggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaaaaagtctttgggtattcaatc 6828803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 455 - 525
Target Start/End: Original strand, 17518431 - 17518501
Alignment:
Q  455 tgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||| |||||||||||||| ||||||||||||||||||  |||||| | ||||||||| ||||||||||    
T  17518431 tgtattagattgagatttcaatggattttaaaagactttttcgttttaaaaaagtcttgtggtattcaatc 17518501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 522
Target Start/End: Original strand, 27786210 - 27786280
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattca 522  Q
    |||||||||||||| ||||||||| |||||||||||||||||| | || || | ||||||||| |||||||    
T  27786210 gggtgtattggattaagatttcaagggattttaaaagacttttttattataaaaaagtcttgtggtattca 27786280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 494
Target Start/End: Complemental strand, 6902733 - 6902693
Alignment:
Q  454 gtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  6902733 gtgtattggattgagatttggaaggattttaaaagactttt 6902693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 493
Target Start/End: Complemental strand, 3604539 - 3604496
Alignment:
Q  450 aggggtgtattggattgagatttcaaaggattttaaaagacttt 493  Q
    |||||||||||| |||||||||||||| |||||||| |||||||    
T  3604539 aggggtgtattgaattgagatttcaaatgattttaatagacttt 3604496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 39753434 - 39753477
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    |||||||||||||||| |||||||| |||||||| |||||||||    
T  39753434 ggggtgtattggattgtgatttcaacggattttagaagactttt 39753477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 494
Target Start/End: Original strand, 7857025 - 7857067
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||| |||||||||||  ||||||||||||||||||||    
T  7857025 gggtgtattagattgagatttagaaggattttaaaagactttt 7857067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 26795705 - 26795644
Alignment:
Q  464 ttgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||| |||||||||||||||||| | || || | || |||||| ||||||||||    
T  26795705 ttgagatttcaagggattttaaaagacttttttattataaaaaaatcttgtggtattcaatc 26795644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 21498 - 21424
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  21498 ggggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatc 21424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 29834370 - 29834296
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  29834370 ggggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatc 29834296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 29865804 - 29865730
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  29865804 ggggtgtattcgattgagatttcaaaggattttaaaagacatttttgttttataaaagtcttgtggtattcaatc 29865730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 451 - 524
Target Start/End: Complemental strand, 6476798 - 6476725
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaat 524  Q
    ||||||||||||||||| ||||||| ||||||||||||||| || ||||||||| ||||||||  |||||||||    
T  6476798 ggggtgtattggattgaaatttcaatggattttaaaagactgttttgttttataaaagtcttgcagtattcaat 6476725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 3110370 - 3110296
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||| ||||||||||  |||||||||||||||| ||||||||| || |||| | ||||||||||    
T  3110370 ggggtgtattggattcagatttcaaaatattttaaaagacttttttgttttataaaaatcttatggtattcaatc 3110296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 30877851 - 30877925
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||   ||||||||||    
T  30877851 ggggtgtattcaattgagatttcaaaggattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 30877925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 447 - 525
Target Start/End: Complemental strand, 10644103 - 10644025
Alignment:
Q  447 tttaggggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||  ||||||||||||||  |||||||||||||||| ||||||| | |||||||   ||||||||||    
T  10644103 tttaggggtgtattcaattgagatttcaaaatattttaaaagacttttttgttttaaaaaagtctttaggtattcaatc 10644025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 494
Target Start/End: Complemental strand, 11007762 - 11007724
Alignment:
Q  456 gtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  11007762 gtattggattgagatttcaaaagattttaaaagactttt 11007724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 5957125 - 5957168
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  5957125 ggggtgtattgaattgagaattcaagggattttaaaagactttt 5957168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 7100163 - 7100206
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||    
T  7100163 ggggtgtattgaattgggatttcaagggattttaaaagactttt 7100206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 494
Target Start/End: Complemental strand, 8794467 - 8794424
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagactttt 494  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||    
T  8794467 ggggtgtattgaattgggatttcaagggattttaaaagactttt 8794424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 451 - 525
Target Start/End: Complemental strand, 34887 - 34813
Alignment:
Q  451 ggggtgtattggattgagatttcaaaggattttaaaagac-ttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    |||||||||||||||||||||| |||||||||||||| || |||| ||||||||| |||||||| |||||||||||    
T  34887 ggggtgtattggattgagattttaaaggattttaaaatactttttttgttttataaaagtcttg-tgtattcaatc 34813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 525
Target Start/End: Complemental strand, 11872 - 11799
Alignment:
Q  452 gggtgtattggattgagatttcaaaggattttaaaagacttttgtgttttatagaagtcttgttgtattcaatc 525  Q
    ||||||||||||||  |||||| | |||||||||||||||||| | || || | |||||||||  |||||||||    
T  11872 gggtgtattggattcggatttctagggattttaaaagacttttttattataaaaaagtcttgtgatattcaatc 11799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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