View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1526-2-Insertion-6 (Length: 704)

Name: NF1526-2-Insertion-6
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1526-2-Insertion-6
NF1526-2-Insertion-6
[»] chr2 (1 HSPs)
chr2 (8-704)||(43878528-43879224)
[»] scaffold0147 (2 HSPs)
scaffold0147 (27-154)||(7574-7701)
scaffold0147 (27-154)||(13158-13285)


Alignment Details
Target: chr2 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 8 - 704
Target Start/End: Complemental strand, 43879224 - 43878528
Alignment:
Q  8 aattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43879224 aattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagta 43879125  T
Q  108 cttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacacatgaatcattcttcttattccctttgtctttttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43879124 cttgttcaacatcacctgaatcattcatctccaattccttcatcttcaatgccaattcattaacacatgaatcattcttcttattccctttgtctttttt 43879025  T
Q  208 ctctttcactccattttctggactaatttgtttcacaaaactcacatgnnnnnnnncaatacttgcagcatcttccattgtttgttctcttgacacattc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| ||||||||||||||||    
T  43879024 ctctttcactccattttctggactaatttgtttcacaaaactcacatgttttttttcaatacttgcagcatcttccattgttttttctcttgacacattc 43878925  T
Q  308 atgctaatttcaccattcctgtttattctattgagatcagactgaagaatatcataaaactcgttgtagaattgatcacttgtgtatgttcttgcactat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43878924 atgctaatttcaccattcctgtttattctattgagatcagactgaagaatatcataaaactcgttgtagaattgatcacttgtgtatgttcttgcactat 43878825  T
Q  408 tgctacttctacctaagaatggattgaaggaaagagatctaggtagtttttgataccttccaaagatgaaacatttgaagtttttgagtgnnnnnnnaag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||    
T  43878824 tgctacttctacctaagaatggattgaaggaaagagatctaggtagtttttgataccctccaaagatgaaacatttgaagtttttgagtgtttttttaag 43878725  T
Q  508 taaaaatctggtcttgcaaatggtttttcttagaagcatttgtggttctggtctgatgtgatgattgaagagaggttttcttgtgtattctccaattttg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43878724 taaaaatctggtcttgcaaatggtttttcttagaagcatttgtggttctggtctgatgtgatgattgaagagaggttttcttgtgtattctccaattttg 43878625  T
Q  608 tcctcacttagacttgtatatatataaagagatgttcactattcctaaggttaccaaaagaaaaatcaattgtcctataaagggtttgtgttgtatt 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43878624 tcctcacttagacttgtatatatataaagagatgttcactattcctaaggttaccaaaagaaaaatcaattgtcctataaagggtttgtgttgtatt 43878528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 7574 - 7701
Alignment:
Q  27 tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga 126  Q
    |||||||| |||  |||||||||| |||||  ||||| || || |||||||| ||||||||||||||||| || |||||||| ||||||| |||||||||    
T  7574 tgaaaaacctgttcacaatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttcgatgtctagtacgtgttcaagatcacctga 7673  T
Q  127 atcattcatctccaattccttcatcttc 154  Q
    |||  |||| || |||||||||||||||    
T  7674 atccatcatatctaattccttcatcttc 7701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 13158 - 13285
Alignment:
Q  27 tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttctatatctagtacttgttcaacatcacctga 126  Q
    |||||||| |||| |||||||| | |||||  ||||| || || |||||||| |||||||||||||||||||| ||||| || ||||||| |||||||||    
T  13158 tgaaaaacctgtccacaatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttctatgtctagcacatgttcaagatcacctga 13257  T
Q  127 atcattcatctccaattccttcatcttc 154  Q
     ||  |||| |||| || ||||||||||    
T  13258 ttccatcatatccattttcttcatcttc 13285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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