View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-7 (Length: 714)
Name: NF1526-2-Insertion-7
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-7 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 238 - 714
Target Start/End: Complemental strand, 34607988 - 34607518
Alignment:
| Q |
238 |
cattggttgcactgttgcaggtattattatcaatccattttaaaaaccaggaacatgtaaattatgagtcaat-ccttggaacaaacagttgagcataga |
336 |
Q |
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| T |
34607988 |
cattggttgcactgttgcaggtattattatcaatccattttaaaaaccaggaacatgtaaattatgagtcaattccttggaacaaacagttgagcttaga |
34607889 |
T |
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| Q |
337 |
taccaaaatttattaaaacatttgatcatacgaaagtnnnnnnntgcatttattcttttttagtcataaagactttgtgtgtagacacacttgtactaat |
436 |
Q |
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| T |
34607888 |
taccaaaatttattaaaacatttgatcatacgaaagtaaaaaaatgcatttattcttttttagtcataaagactttgtgtgtagacacacttgtactaat |
34607789 |
T |
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| Q |
437 |
acttcgagaagctacaattatgcttcacaacaacacatattatttgattcacatttaccaccaccaggaaacctaatctttaaacaataatcattacaag |
536 |
Q |
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| T |
34607788 |
acttcgagaagctacaattatgcttcacaacaacacatattatttgattcacatttaccaccaccaggaaacctaatctttaaacaataatcattacaag |
34607689 |
T |
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| Q |
537 |
cttgatcgttatttggacatttcacttctgtaatgcaatatttcgtagtaggtggtggtgcatcaattgatcctcctacatacaataaatataatattgt |
636 |
Q |
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| T |
34607688 |
ctttatcgttatttggacatttcacttctgtaatgcaatatttcgtagtaggt---ggtgcatcaattgatcctcc----tacaataaatacaatattgt |
34607596 |
T |
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| Q |
637 |
cagaaagcgtgagcaacatcaaattttaaatttatatcattatttagaagaaataaaattgggggagatgaaatcatt |
714 |
Q |
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| T |
34607595 |
cagaaaccgtgagcaacatcaaattttaaatttatatcattatttaaaagaaataaaattgggggagattaagtcatt |
34607518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 340 - 714
Target Start/End: Complemental strand, 34598687 - 34598320
Alignment:
| Q |
340 |
caaaatttattaaaacatttgatcatacgaaagtnnnnnnntgcatttattcttttttagtcataaagactttgtgtgtagaca-cacttgtactaatac |
438 |
Q |
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| T |
34598687 |
caaaatttattaaaacacttgatcatacgaaagtaaaaaaatgtatttattctcatttagtcataaagactttatgtgtagaaaacacttgtaccaacac |
34598588 |
T |
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| Q |
439 |
ttcgagaagctacaattatgcttcacaacaacacatattatttgattcacatttaccaccaccaggaaacctaatctttaaacaataatcattacaagct |
538 |
Q |
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| T |
34598587 |
ttcaagaagctacaattatgcttcacaacaacacatattatttgattcacatttaccaccaccaggaaacctaatctttaaacaataatcattacaagct |
34598488 |
T |
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| Q |
539 |
tgatcgttatttggacatttcacttctgtaatgcaatatttcgtagtaggtggtggtgcatcaattgatcctcctacatacaataaatataatattgtca |
638 |
Q |
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| T |
34598487 |
ttatcgttatttggacatttcacttctgtaatgcaatattttgtagta---ggtcgtgcatcaattgatcctcc----tacaataaatataatattgtca |
34598395 |
T |
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| Q |
639 |
gaaagcgtgagcaacatcaaattttaaatttatatcattatttagaagaaataaaattgggggagatgaaatcatt |
714 |
Q |
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| T |
34598394 |
gaaaccgtgagcaacactaaattttaaattttgatgattatttaaaagaaataaaatt-ggggagatgaaatcatt |
34598320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 34608243 - 34608123
Alignment:
| Q |
8 |
tgtttcagaggtataaataagtcccataggaaatctctatgaggaggggctaaggagacaaatttggaatcacattgcactttaagttagaattccatgt |
107 |
Q |
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| T |
34608243 |
tgtttcagaggtataaataagtctcataggaaatctctatgaggaggggctaaggagacaaatttggaatcacgttgcactttaagttagaaatccatgt |
34608144 |
T |
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| Q |
108 |
aactctatgatttgtggtgtt |
128 |
Q |
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| T |
34608143 |
aactctatgatttgtggtgtt |
34608123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 34594054 - 34593951
Alignment:
| Q |
8 |
tgtttcagaggtataaataagtcccataggaaatctctatgaggaggggctaaggagacaaatttggaatcacattgcact-ttaagttagaattccatg |
106 |
Q |
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|||||| |||||||||||||||| |||| || |||||||| |||| |||||||||||| |||||||||||||||||||| | | ||||||||| |||||| |
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| T |
34594054 |
tgtttcggaggtataaataagtctcatatgatatctctataaggaagggctaaggagaaaaatttggaatcacattgcagtgtgaagttagaaatccatg |
34593955 |
T |
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| Q |
107 |
taac |
110 |
Q |
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| T |
34593954 |
taac |
34593951 |
T |
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