View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1526-2-Insertion-9 (Length: 861)
Name: NF1526-2-Insertion-9
Description: NF1526-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1526-2-Insertion-9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 7 - 861
Target Start/End: Complemental strand, 43077749 - 43076882
Alignment:
| Q |
7 |
attaattacctcaaaaagagagagagcattgccaaatatgaaatcaactgagccttcaatataacaatctttgtaatagtgcctaccaatatgatcatac |
106 |
Q |
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| T |
43077749 |
attaattacctcaaaaagagagagagcattgccaaatatgaaatcaacagagccttcaatataacaatctttataatagtgcctaccaatatgatcatac |
43077650 |
T |
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| Q |
107 |
agtgtgtcctgtgcccctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactccttgttttccaactgctcctggtttag |
206 |
Q |
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| T |
43077649 |
agtgtgtcctgtgcccctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactccttgttttccaactgctcctggtttag |
43077550 |
T |
|
| Q |
207 |
gaattggagcagtattctgtatacatacacaca--------cagtcttaattttcttgtaacaacacaaacatagaaatgaggcttgttttgttacttac |
298 |
Q |
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| T |
43077549 |
gaattggagcagtattctgtatacatacatacatacactcacagtcttaattttcttgtaacaacacaaacatagaaatgaggcttgttttgttacttac |
43077450 |
T |
|
| Q |
299 |
tttgaatgtgatgttcttagcaatggaataaggtgaattcactgcaaaagttgcagaaccataagttcctagtgtctgtccttttgctccaggattagga |
398 |
Q |
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| T |
43077449 |
tttgaatgtgatgttcttagcaatgaaataaggtgaattcactgcaaaagttgccgaaccataagttcctagtgtctgtccttttgctccaggattagga |
43077350 |
T |
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| Q |
399 |
gttagagcagtgtcaccccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatgctaactttctctctgt |
498 |
Q |
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| T |
43077349 |
gttagagcagtgtcaccccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatgctaactttctctctgt |
43077250 |
T |
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| Q |
499 |
atatacacatttttatttttaagacaaattaaatagcaaataagtgattatcatttatatgtcaaatgtaattaaaattttgttacaatagtaaacacac |
598 |
Q |
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| T |
43077249 |
atatacacatttttatttttaagacaaattaaatagcaaataagtgattatcatttatatgtcaaatgtaattaaaattttgttacaatagtaaacacac |
43077150 |
T |
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| Q |
599 |
aaaattttgtaaattgttttataaatagttcattagctgcaaagtcttctatactcaaataccaattatcaaagcatttaaatcacnnnnnnnnnggaca |
698 |
Q |
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| T |
43077149 |
aaaattttgtaaattg-tttataaatagttcattagctgcaaagtcttctatactcaaataccaattatcaaagcatttaaatcac--aaaaaaaggaca |
43077053 |
T |
|
| Q |
699 |
ctaatttgtgatcactttccaactagaacnnnnnnncaccaaaccccacctctcacatcaacaaactaaggccataaaacagaatgtgac-aaattgtaa |
797 |
Q |
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| T |
43077052 |
ctaatttgtgatcactttccaactagaacaaaaaaacaccaaaccccacctctcacatgaacaaaccaaggccataaaacagaatgtgacaaaattgtaa |
43076953 |
T |
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| Q |
798 |
tggaataat------aacaaacaaaaaagtataatagcacaagtacttacgtgt-aacccctgcatgaacc |
861 |
Q |
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| T |
43076952 |
tggaataataacaaaaacaaaaaaaaaagtataatagcacaagtacttacgtgtaaacccctgcatgaacc |
43076882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 290 - 493
Target Start/End: Original strand, 33965670 - 33965867
Alignment:
| Q |
290 |
gttacttactttgaatgtgatgttcttagcaatggaataaggtgaattcactgcaaaagttgcagaaccataagttcctagtgtctgtccttttgctcca |
389 |
Q |
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| T |
33965670 |
gttacatactttgaatgtgatgttcttggcaatgaaataaggtgaattaactgcaaaagttgctgaaccatatgttcccaatggattccctcttggacca |
33965769 |
T |
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| Q |
390 |
ggattaggagttagagcagtgtcaccccattgaacaattgttttatctgcacctgctccttgtatggttatgaatgattttaatgcaggaatgctaactt |
489 |
Q |
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| T |
33965770 |
ggt------gttgcagcagtgtcaccccattgaacaattgttgtatctgcaccatctccttctatggttatgaaggattttaaaggaggaatgttaactt |
33965863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 33965261 - 33965445
Alignment:
| Q |
14 |
acctcaaaaagagagagagcattgccaaatatgaaatcaactgagccttcaatataacaatctttgtaatagtgcctaccaatatgatcatacagtgtgt |
113 |
Q |
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| T |
33965261 |
acctcaaatagagaaagagcattgccaaatatgaaatcaacagaaccttcaatgtaacaatctttatagtaatgtctaccaatatgatcataaagtgtat |
33965360 |
T |
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| Q |
114 |
cctgtgcccctaagaatttgcagccaaggaacatagcagtatcagctgaaattctcaatgccactccttgttttccaactgctcc |
198 |
Q |
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| T |
33965361 |
cttgtgctcccaaaaatctacaccctaagaatgatgctgtgtctgctgaaattctaaatgctactgcttgttttccaattgctcc |
33965445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 20311504 - 20311564
Alignment:
| Q |
392 |
attaggagttagagcagtgtcaccccattgaacaattgttttatctgcacctgctccttgta |
453 |
Q |
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| T |
20311504 |
attaggagtttgagaagtgtcaccccattgaac-tttagtttatctgcacctgctccttgta |
20311564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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