View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15260_high_1 (Length: 787)

Name: NF15260_high_1
Description: NF15260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15260_high_1
NF15260_high_1
[»] chr4 (3 HSPs)
chr4 (10-771)||(8315325-8316086)
chr4 (201-689)||(42372920-42373408)
chr4 (478-686)||(54114492-54114700)
[»] scaffold0354 (1 HSPs)
scaffold0354 (11-770)||(10594-11353)
[»] chr5 (1 HSPs)
chr5 (293-627)||(3519716-3520050)
[»] chr3 (1 HSPs)
chr3 (523-602)||(37995083-37995162)


Alignment Details
Target: chr4 (Bit Score: 738; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 10 - 771
Target Start/End: Original strand, 8315325 - 8316086
Alignment:
Q  10 catcatcactcaacagctttcttcccagaagaatagtaattcagataccacctcacaaatttcttcaaaccagcctgcagatccgtcaccggcttataac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315325 catcatcactcaacagctttcttcccagaagaatagtaattcagataccacctcacaaatttcttcaaaccagcctgcagatccgtcaccggcttataac 8315424  T
Q  110 caagctctctctgcgcataactaatattcgcatgagtaaactgcacatccccgttcctcggcaacttcataatattcctcttcgccttagtcttcaacag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8315425 caagctctctctgcgcataactaatattcgcatgagtaaactgcacatccccattcctcggcaacttcataatattcctcttcgccttagtcttcaacag 8315524  T
Q  210 cctctccaaaatacccacaagatcactaacaggaacaggcgaggtattccccaaattgaaaaccctcaactgtgccagccccctcttcttcccaccactt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8315525 cctctccaaaatacccacaagatcactaacaggaacaggcgaggtattccccaaattgaaaaccctcaactgtgccggccccctcttcttcccaccactt 8315624  T
Q  310 ccagtactcttctcagcagtatccaaagctcctaaacaccccctcacaatatcatcaatataagtaaaatccctcgcaacggtaccatgattcgccgcct 409  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8315625 ccagtactcttctcagcagtatccaaagcacctaaacaccccctcacaatatcatcaatataagtaaaatccctcgcaacggtgccatgattcgccgcct 8315724  T
Q  410 caaaaataggaatagtcttccccttcaaaatatctctagtgaaaaagaaataagccatatcaggcctaccccaaggaccataaacagtgaaaaacctcaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315725 caaaaataggaatagtcttccccttcaaaatatctctagtgaaaaagaagtaagccatatcaggcctaccccaaggaccataaacagtgaaaaacctcaa 8315824  T
Q  510 accagttaaagaaagaccatagatatgattataagtatgcgcgatttcttcaccggctttcttagtagcggcatacaaactagcaggttgatcagttcta 609  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315825 accagttaaagaaagaccatagatatgattataagtatgtgcgatttcttcaccggctttcttagtagcggcatacaaactagcaggttgatcagttcta 8315924  T
Q  610 tctctttcagaaaaaggaaccttagtattcaatccataaacagaactagaactagcccaaacaattgaaggttgaggattaacacttttacaaacctcaa 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315925 tctctttcagaaaaaggaaccttagtattcaatccataaacagaactagaactagcccaaacaattgaaggttgaggattaacacttttacaaacctcaa 8316024  T
Q  710 gcaaattaacaaaaccagcaatgttactatgaacataagaaccaggattctccatagcatac 771  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8316025 gcaaattaacaaaaccagcaatgttactatgaacataagaaccaggattctccatagcatac 8316086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 201 - 689
Target Start/End: Original strand, 42372920 - 42373408
Alignment:
Q  201 cttcaacagcctctccaaaatacccacaagatcactaacaggaacaggcgaggtattccccaaattgaaaaccctcaactgtgccagccccctcttcttc 300  Q
    |||||| ||| ||||||||||| | ||||| | ||| ||||||||||| || |||||||||||||| |||||||| || || |||   ||| ||||||||    
T  42372920 cttcaaaagcttctccaaaatagcaacaagcttactcacaggaacaggtgaagtattccccaaattaaaaaccctaaattgagccgaacccttcttcttc 42373019  T
Q  301 ccaccacttccagtactcttctcagcagtatccaaagctcctaaacaccccctcacaatatcatcaatataagtaaaatccctcgcaacggtaccatgat 400  Q
    |||||||| ||||||||||| |  || ||||||| ||| |||||||| ||| | |||| ||||||||| || ||||||||||| || || |  |||  ||    
T  42373020 ccaccactcccagtactcttttttgccgtatccagagcccctaaacaacccttaacaacatcatcaatgtatgtaaaatccctagccactgatccaccat 42373119  T
Q  401 tcgccgcctcaaaaataggaatagtcttccccttcaaaatatctctagtgaaaaagaaataagccatatcaggcctaccccaaggaccataaacagtgaa 500  Q
      |  |  ||||| |  |  ||    |||||||||||||||||  | ||||| |||||||| |||||||||||||| |||||||| |||||||| |||||    
T  42373120 ctggtgattcaaacactgttatctgtttccccttcaaaatatcctttgtgaagaagaaatacgccatatcaggccttccccaaggcccataaaccgtgaa 42373219  T
Q  501 aaacctcaaaccagttaaagaaagaccatagatatgattataagtatgcgcgatttcttcaccggctttcttagtagcggcatacaaactagcaggttga 600  Q
    ||| | |||  | || |  ||||| || |||||||||||||||||||| || ||| |||||||||||||||| || || || || | ||| || |||||     
T  42373220 aaatcgcaacgcggtgattgaaagcccgtagatatgattataagtatgtgcaattccttcaccggctttcttcgtcgccgcgtagagactcgccggttgg 42373319  T
Q  601 tcagttctatctctttcagaaaaaggaaccttagtattcaatccataaacagaactagaactagcccaaacaattgaaggttgaggatt 689  Q
    || |||| |||| | || |||||||||||||| | ||||||||||||||| || || ||   ||||||||||||||  |||||||||||    
T  42373320 tctgttcgatctttctccgaaaaaggaaccttcgaattcaatccataaacggagctggacgaagcccaaacaattgctggttgaggatt 42373408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 686
Target Start/End: Complemental strand, 54114700 - 54114492
Alignment:
Q  478 ccccaaggaccataaacagtgaaaaacctcaaaccagttaaagaaagaccatagatatgattataagtatgcgcgatttcttcaccggctttcttagtag 577  Q
    ||||| || ||||||||||| ||||| |  ||||| || |  |||||||| || || ||||||||||| || | |||||||||||| |||||||| || |    
T  54114700 ccccatggtccataaacagtaaaaaatcgtaaaccggtgattgaaagaccgtaaatgtgattataagtgtgagtgatttcttcacctgctttcttcgtcg 54114601  T
Q  578 cggcatacaaactagcaggttgatcagttctatctctttcagaaaaaggaaccttagtattcaatccataaacagaactagaactagcccaaacaattga 677  Q
    | ||||| ||||| || |||||||| || | |||   ||||||||| ||||| ||    || || |||||||| ||||| |||  |||||||||||| ||    
T  54114600 ctgcatataaactcgccggttgatcggtccgatccgattcagaaaacggaactttctcgtttaaaccataaaccgaactcgaagaagcccaaacaatcga 54114501  T
Q  678 aggttgagg 686  Q
     ||||||||    
T  54114500 cggttgagg 54114492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 770
Target Start/End: Original strand, 10594 - 11353
Alignment:
Q  11 atcatcactcaacagctttcttcccagaagaatagtaattcagataccacctcacaaatttcttcaaaccagcctgcagatccgtcaccggcttataacc 110  Q
    ||||||||||| ||||||||||||||| |||||| ||||| | ||||||||| ||||| ||||||||||||| ||| | ||| |||   || ||||||||    
T  10594 atcatcactcatcagctttcttcccagcagaataataattaacataccacctaacaaacttcttcaaaccagtctgtaaatcggtcgtaggtttataacc 10693  T
Q  111 aagctctctctgcgcataactaatattcgcatgagtaaactgcacatccccgttcctcggcaacttcataatattcctcttcgccttagtcttcaacagc 210  Q
    || |||| | | |||||| |||||||||||||| |||||||| ||||| ||||||| ||||| |||||| | ||| ||||| ||||||  ||||||||||    
T  10694 aaactcttttttcgcatagctaatattcgcatgcgtaaactgaacatctccgttccgcggcatcttcatcacatttctcttggccttaaccttcaacagc 10793  T
Q  211 ctctccaaaatacccacaagatcactaacaggaacaggcgaggtattccccaaattgaaaaccctcaactgtgccagccccctcttcttcccaccacttc 310  Q
    |||||||||||||  ||||||||| |||| || || || || |||||||||||||| ||||||||||||||||||   ||||||||||| |||||||| |    
T  10794 ctctccaaaatactaacaagatcagtaactggtaccggtgaagtattccccaaattaaaaaccctcaactgtgccgtacccctcttcttaccaccactac 10893  T
Q  311 cagtactcttctcagcagtatccaaagctcctaaacaccccctcacaatatcatcaatataagtaaaatccctcgcaacggtaccatgattcgccgcctc 410  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||| | | ||    
T  10894 cagtactcttctcagcagtatccaatgctcctaaacaccccctcacaatatcatcaatataagtaaaatccctagcaacagttccatggttcggcccttc 10993  T
Q  411 aaaaataggaatagtcttccccttcaaaatatctctagtgaaaaagaaataagccatatcaggcctaccccaaggaccataaacagtgaaaaacctcaaa 510  Q
     ||||| |  || |  |||||  ||||||||||  |||||||||| || || |||||||| ||||| |||||||| |||||||||||||| || |||||     
T  10994 gaaaatcgttatcgatttccctctcaaaatatccttagtgaaaaaaaagtatgccatatctggccttccccaaggtccataaacagtgaagaatctcaat 11093  T
Q  511 ccagttaaagaaagaccatagatatgattataagtatgcgcgatttcttcaccggctttcttagtagcggcatacaaactagcaggttgatcagttctat 610  Q
    || ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || ||||| |||||||||||||||||||||||||| ||||    
T  11094 ccggttaacgaaagtccatagatatgattataagtatgcgcgatttcttcgcccgcttttttcgtagcagcatacaaactagcaggttgatcagtcctat 11193  T
Q  611 ctctttcagaaaaaggaaccttagtattcaatccataaacagaactagaactagcccaaacaattgaaggttgaggattaacacttttacaaacctcaag 710  Q
    || |||| ||||| || || || | ||| ||||||||||| ||||| |||  |||||| || || | |||||| || | | ||  |||||| || |||||    
T  11194 ctttttcggaaaagggtacttttgaatttaatccataaactgaacttgaagaagcccatactatagcaggttgtggttcagcagatttacacacttcaag 11293  T
Q  711 caaattaacaaaaccagcaatgttactatgaacataagaaccaggattctccatagcata 770  Q
     ||||||||||| || |||||||| ||||||||||| || |||||||| |||||||||||    
T  11294 taaattaacaaatcctgcaatgttgctatgaacatatgatccaggattttccatagcata 11353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 293 - 627
Target Start/End: Original strand, 3519716 - 3520050
Alignment:
Q  293 tcttcttcccaccacttccagtactcttctcagcagtatccaaagctcctaaacaccccctcacaatatcatcaatataagtaaaatccctcgcaacggt 392  Q
    |||||||||||||||| |||||||| |||| ||| ||||||||||| |||||||||||  | ||||||||| ||||||| |||||||| || |  ||  |    
T  3519716 tcttcttcccaccactaccagtacttttcttagctgtatccaaagcccctaaacaccctttgacaatatcaccaatatacgtaaaatctctagttacact 3519815  T
Q  393 accatgattcgccgcctcaaaaataggaatagtcttccccttcaaaatatctctagtgaaaaagaaataagccatatcaggcctaccccaaggaccataa 492  Q
     |||  ||  |  |  ||||| | || |||    || || |||||||||||  ||||||| ||| ||  |||||||||||| | ||||||||||||||||    
T  3519816 tccaccatcaggagattcaaacacagtaatttgttttcctttcaaaatatccttagtgaataagtaaacagccatatcaggacgaccccaaggaccataa 3519915  T
Q  493 acagtgaaaaacctcaaaccagttaaagaaagaccatagatatgattataagtatgcgcgatttcttcaccggctttcttagtagcggcatacaaactag 592  Q
    |||||||| || |  ||||||||||  ||||||||||| ||||||||||||||||| || | ||||||||| |||||||| || || ||||| | |||||    
T  3519916 acagtgaagaaacgtaaaccagttacggaaagaccataaatatgattataagtatgtgcaaattcttcaccagctttcttcgtcgctgcatagagactag 3520015  T
Q  593 caggttgatcagttctatctctttcagaaaaagga 627  Q
    |||||||||| |||| |||  |||| |||||||||    
T  3520016 caggttgatccgttcgatccttttccgaaaaagga 3520050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 602
Target Start/End: Original strand, 37995083 - 37995162
Alignment:
Q  523 agaccatagatatgattataagtatgcgcgatttcttcaccggctttcttagtagcggcatacaaactagcaggttgatc 602  Q
    ||||| ||||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||| || | ||| || ||||||||    
T  37995083 agaccgtagatgtgattgtaagtatgtgcgatttcttcgccggcttttttagttgcggcgtagagactcgccggttgatc 37995162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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