View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15260_low_10 (Length: 287)
Name: NF15260_low_10
Description: NF15260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15260_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 29851643 - 29851467
Alignment:
| Q |
12 |
ttttaattgttgacttctgatttaatgggattaaccgtaacaaacgtacctaataatgaagagaacgtcttttgtagtggaagaggtgacaacaagtccg |
111 |
Q |
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| T |
29851643 |
ttttaattgttgacttctgatttaaagggattaacggtaacaaacgtacctaatgatgaagagaacgtcttttggagtggaggagatgacaataagtccg |
29851544 |
T |
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| Q |
112 |
gtggcggtatcgaggattgcaattttgataatcgggatgtgggtaggagctccgtgcccattagcaagtctgatcatcaag |
192 |
Q |
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| T |
29851543 |
gtggtggtatcgaggattgcgattttgatagtcagg----gcgtcggagctctgtgcccattagcaactctaatcatcaag |
29851467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 29870508 - 29870354
Alignment:
| Q |
38 |
gggattaaccgtaacaaacgtacctaataatgaagagaacgtcttttgtagtggaagaggtgacaacaagtccggtggcggtatcgaggattgcaatttt |
137 |
Q |
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| T |
29870508 |
gggattaaccgtaacaaacgtacctaatgatgaagagaacgtcttttggagtggaggaggtgacaacgagtccggtggtggtatcgaggattgcgatttt |
29870409 |
T |
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| Q |
138 |
gataatcgggatgtgggtaggagctccgtgcccattagcaagtctgatcatcaag |
192 |
Q |
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| T |
29870408 |
gatagtgagggcgtgggtcagagctgcgtgcccattagcaactctgatcatcaag |
29870354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 192
Target Start/End: Original strand, 30244227 - 30244380
Alignment:
| Q |
39 |
ggattaaccgtaacaaacgtacctaataatgaagagaacgtcttttgtagtggaagaggtgacaacaagtccggtggcggtatcgaggattgcaattttg |
138 |
Q |
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| T |
30244227 |
ggattaaccggaacaaacgtacctaatgatgaagagaacatcttttggagtggaggaggtgacaacgagtccagtcgtggcatcgaggattgcgattttg |
30244326 |
T |
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| Q |
139 |
ataatcgggatgtgggtaggagctccgtgcccattagcaagtctgatcatcaag |
192 |
Q |
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| T |
30244327 |
attatcagggtgtgggtaggagctcaatgcccattagcgagtctgatcatcaag |
30244380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 30398639 - 30398558
Alignment:
| Q |
111 |
ggtggcggtatcgaggattgcaattttgataatcgggatgtgggtaggagctccgtgcccattagcaagtctgatcatcaag |
192 |
Q |
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| T |
30398639 |
ggtgggggtatcgaggattgcgattttgacaatcggggcatgggtcggagctctgtgcccattagcaagtctgatcatcaag |
30398558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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