View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15260_low_2 (Length: 763)
Name: NF15260_low_2
Description: NF15260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15260_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 32994 - 33333
Alignment:
| Q |
30 |
gttagatgaattgcagcccccaactcaggctcctagatccaccattgtatacaaacatcatcacacgaatgcggtttcgttttttacctttggctcaact |
129 |
Q |
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| T |
32994 |
gttagatgaattgca-cccccaactcaggctcctagatccaccattgtatacaaacatcatcacacgaatgcggtttcgttttttacctttggctcaact |
33092 |
T |
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| Q |
130 |
catttgatatttgataagatgttaaataattataagatcggacaataaattaatgttgggtcaattttaaataaatagaaaag-aaaaaacaattcaaaa |
228 |
Q |
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| T |
33093 |
catttgatatttgataagatgttaaataattataagatcggacaataaattaatgttgtgtcaattttaaataaatagaaaagaaaaaaacaattcaaaa |
33192 |
T |
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| Q |
229 |
gcacatgtagaaacttccacgaagccaaggtatgaaaaagaggtatatagcgcgagaaagtaatataaaatatctacaaacccagacagaaaatagacat |
328 |
Q |
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| T |
33193 |
gcacatgtagaaacttccacgaagccaaggtatgaaaaagaggtatatagcacgagaaagtaatataaaatatctacaaacccagacagaaaatagacat |
33292 |
T |
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| Q |
329 |
tagataataaatagaattggaaaagaatttggtgtattgca |
369 |
Q |
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| T |
33293 |
tagattataaatagaattggaaaagcatttggtgtattgca |
33333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 449 - 590
Target Start/End: Original strand, 33413 - 33554
Alignment:
| Q |
449 |
gcattcaaacgaaaacaatatattgaaataaatcacgtgaatcaagacatgcactatttgtttctattaacttgatttagtgtattaaaacttaagtata |
548 |
Q |
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| T |
33413 |
gcattcaaacgaaaacaaaatattgaaataaatcacgtgaatcaagacattcactatttgtttctattaacttgatttagtgtattaaaacttaagtata |
33512 |
T |
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| Q |
549 |
ttaagttaaaatatgcaattgctaacttggtaataatattta |
590 |
Q |
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| T |
33513 |
ttaagttaaaatatgcaattgctaacttggtaataatattta |
33554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 603 - 702
Target Start/End: Original strand, 33964 - 34063
Alignment:
| Q |
603 |
catatataatgataatataaatgaatgcctagtaaaagtcacttgtcaattgagttaaaaacaattcacgtttaaaaatgaacacttgagttaattatgt |
702 |
Q |
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| T |
33964 |
catatataatgataatataaatgaatgcgtagtaaaagtcacttgtcaattgagttaaaaacaattcacgtttaaaaatgaacacttgagttaattatgt |
34063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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