View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15260_low_3 (Length: 654)
Name: NF15260_low_3
Description: NF15260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15260_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 360
Target Start/End: Original strand, 32682951 - 32683297
Alignment:
| Q |
14 |
agcacagaatcatcacaacaaagaatcaatcacctacctagtcacatgcactattatgttcattttcatctaagtacctgcacgtcctagtaatttccat |
113 |
Q |
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| T |
32682951 |
agcacagaatcatcacaacaaagaatcaatcacctacctagtcacatgcactattatgatcattttcatctaagtacctgaacgtcctagtaattttcat |
32683050 |
T |
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| Q |
114 |
ccaagtattattgtcatttatttctgcaaacagaaatttacattcagaagtaaagtaacttgttgcttgctcatacatgcaaatgggacagatagatttg |
213 |
Q |
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| T |
32683051 |
ccaagtattattgtcatttatttctgcaaacagaaatttacattcagaagcaaagtaacttgttgcttgctcatacatgcaaatgggacagatagatttg |
32683150 |
T |
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| Q |
214 |
tctttctcacatgactgtaacannnnnnnacatgtgcaagttttagatatgggagggccaccaccatattcatgctatcattggtaatagatcaatcatg |
313 |
Q |
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| T |
32683151 |
tctttctcacgtgactgtaacatttttttacatgtgcaagttttagatatgggagggccaccaccatattcatgctatcattggtaatagatcaatcatg |
32683250 |
T |
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| Q |
314 |
gtgctgttaaaggtttttccaagagtagtggtggtgttaaatcccct |
360 |
Q |
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| T |
32683251 |
gtgctgttaaaggtttttccaagagtagtggtggtgttaaatcccct |
32683297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 381 - 636
Target Start/End: Original strand, 32683466 - 32683737
Alignment:
| Q |
381 |
tactttgttatggatcttacttcattaatcttccttattaattaagcaaagcaaactttattaagattcaaatcaacatgttctcttatataaccagcca |
480 |
Q |
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| T |
32683466 |
tactttgttatggatcttacttcattaatctttcttattaattaagcaaagcaaactttattaagattcaaatcaacatgttctcttatataacgagcca |
32683565 |
T |
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| Q |
481 |
agtacgtagatccattgtt----------------aaaaaataacatccacttgaagatacttgtatgaaccaactaggaaggaagggacttttatgtac |
564 |
Q |
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| T |
32683566 |
agtacgtagatccatactccacagaacgctaggacaaaaaataacatccacttgaagatacttgtatgaaccaactaggaaggaagggacttttatgtac |
32683665 |
T |
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| Q |
565 |
tccattgttagataataaagggactttcgttccatgtcgacactagccctagcacattgctcttgttatgtt |
636 |
Q |
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| T |
32683666 |
tccattgttagataataaagggactttcgttccatgtcgacactagccctagcacattgctcttgttatgtt |
32683737 |
T |
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