View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15260_low_5 (Length: 562)
Name: NF15260_low_5
Description: NF15260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15260_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 165 - 547
Target Start/End: Original strand, 50537532 - 50537928
Alignment:
| Q |
165 |
cagcagttccaaatgaagacgaggaagttgaaggtgatgtatgttttttgtgtgtgtctgtgtattcaattactttgagcgggctttccgggttattcac |
264 |
Q |
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| T |
50537532 |
cagcagttccaaatgaagacgaggaagttgaagatgatgtatgttttttgtgtgtgtctgtgtattcaattactttgagcgggctttccgggttattcac |
50537631 |
T |
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| Q |
265 |
tgttgtcagtgtcatttccatgt-----------tttatttacttttgtttaatgtatgctagtttgacaataagaaaagtaatagnnnnnnncattaaa |
353 |
Q |
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| T |
50537632 |
tgttgtcagtgtcatttccatgtgttcttgccgttttgtttacttttgtttaatgtatgctagtttgacaataagaaaagtaatagaaaaaaacattaaa |
50537731 |
T |
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| Q |
354 |
atattgatttgatttactgaataaagctgaaactggtgttataggttgaagccaaagaagaagaa---gaacaagaagctacgaccagcaagagttactt |
450 |
Q |
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| T |
50537732 |
atattgatttgatttactgaataaagctgaaactggtgttataggttgaagccaaagaagaagaacaagaacaagaagctacgaccagcaagagttactt |
50537831 |
T |
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| Q |
451 |
tcaagacaaagagtgatattgatcacttggatgatggttataggtggcgcaagtatggccaaaaaccagtcaaaaacagcccatttcccaggtatat |
547 |
Q |
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| T |
50537832 |
tcaagacaaagagtgatgttgatcacttggatgatggttataggtggcgcaagtatggccaaaaaccagtcaaaaacagcccatttcccaggtatat |
50537928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 50537391 - 50537479
Alignment:
| Q |
17 |
agagaaggatgaagatcatggaatcagacttgtagagaatcaaaatgatcaagatcagatgaagaaacagtgagttgattaaaatatca |
105 |
Q |
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| T |
50537391 |
agagaaggatgaagatcatggaatcagacttgtagagaatcaaaatgatcaagatcagatgaagaaacagtgagttgattaaaatatca |
50537479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 448 - 544
Target Start/End: Complemental strand, 12869215 - 12869119
Alignment:
| Q |
448 |
ctttcaagacaaagagtgatattgatcacttggatgatggttataggtggcgcaagtatggccaaaaaccagtcaaaaacagcccatttcccaggta |
544 |
Q |
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| T |
12869215 |
ctttcatgacaaagagtgaagttgatcacctagatgatggctataggtggcgtaaatatggccaaaaagctgtgaaaaacagtccttttcccaggta |
12869119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 529
Target Start/End: Original strand, 12557658 - 12557739
Alignment:
| Q |
448 |
ctttcaagacaaagagtgatattgatcacttggatgatggttataggtggcgcaagtatggccaaaaaccagtcaaaaacag |
529 |
Q |
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| T |
12557658 |
ctttcatgacaaagagtgaagttgatcacctagatgatggttataggtggcgtaaatatggccaaaaagctgtgaaaaacag |
12557739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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