View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15260_low_6 (Length: 469)
Name: NF15260_low_6
Description: NF15260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15260_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 8905665 - 8906087
Alignment:
| Q |
16 |
atgatggccattgaaaaggctagagatatgctcttaactcaaatctgtctggaaactaactctttacaggtgtttaaagcttataacaagaatattggag |
115 |
Q |
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| T |
8905665 |
atgatggccattgaaaaggctagagatatgctcttaactcaaatctgtctggaaactgactctttacaggtgtttaaagcttataacaagaatattggag |
8905764 |
T |
|
| Q |
116 |
tgccttggaagatgagaagcagatggctaaactgtttgagcttttgcaaaagtattaattgctcttttatgcacactcttagggaggggaatattgttgc |
215 |
Q |
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| T |
8905765 |
tgccttggaagatgagaagcagatggctaaactgtttgagcttttgcaaaagtataaattgctcttttatgcacactcttagggaggggaatattgttgc |
8905864 |
T |
|
| Q |
216 |
agacactttagctaagaatggtcagggattagctttatactctactcaatggtggccttccccacccaatttcactttgtctcttcttgatagggataga |
315 |
Q |
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| T |
8905865 |
agacactttagctaagaatggtcagggattagctttatactctactcaatggtggccttccccacccaatttcattttgtctcttctggatagggataga |
8905964 |
T |
|
| Q |
316 |
ttaggattgtctatttctagaatgacatagtttgctggtttttggttttgcttggttccnnnnnnngaattgttgtatttggttcaggccttctcctggt |
415 |
Q |
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| T |
8905965 |
ttaggattgtctatttctagaatgacatagtttgctggtttttggttctgcttggttcc-ttttttgaattgttgtatttggttcaggccttctcctggt |
8906063 |
T |
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| Q |
416 |
tctttaatgaatttttagccttat |
439 |
Q |
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| T |
8906064 |
tctttaatgaatttttagccttat |
8906087 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 39873872 - 39873825
Alignment:
| Q |
94 |
gcttataacaagaatattggagtgccttggaagatgagaagcagatgg |
141 |
Q |
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| T |
39873872 |
gcttacaacaagaacattggagtgccttggaagatgagaaccagatgg |
39873825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 23059951 - 23059910
Alignment:
| Q |
100 |
aacaagaatattggagtgccttggaagatgagaagcagatgg |
141 |
Q |
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| T |
23059951 |
aacaagaacattggagtgccttggaagatgagaatcagatgg |
23059910 |
T |
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