View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15260_low_8 (Length: 414)
Name: NF15260_low_8
Description: NF15260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15260_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 46545456 - 46545063
Alignment:
| Q |
12 |
aatactagtagtttattatttatgctatagactagtcggcatgatgatgtacatttgaaactcattcaagtatgtaaagataaatacttgataatnnnnn |
111 |
Q |
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| T |
46545456 |
aatactagtagtttattattgatgctatagactagtcggcatgatgatgtacatttgaaactcattcaagtatgtaaagataaatgcttgataataaaaa |
46545357 |
T |
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| Q |
112 |
nnnn-tacttgacaattcctctacataaaataatacttgaccaaggaagcaaggcaatcaatatattgtctatatacaagtttcatatatagnnnnnnnn |
210 |
Q |
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| T |
46545356 |
aaaaatacttgacaattcctctacataaaataatacttgaccaaggaagcaaggcaatcaatatattgtctatatacaagtttcatatatagaaaaaaaa |
46545257 |
T |
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| Q |
211 |
nnngttgtttatttaatcaaacatggaatagagattccttaaaaagcatagaaatgatttatgcataaattctatgagttatcgtgaacaattac----- |
305 |
Q |
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| T |
46545256 |
aa-gttgtttatttaatcaaacatggaatagagattccttaaaaaacatagaaatgatttatgcataaattctatgagttatcgtgaacaattacataaa |
46545158 |
T |
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| Q |
306 |
aacnnnnnnnnncagcaacatggttttccttgaacattaatgtcccaaatgcgatgatatatatgatatg-tattttcaactttagagcctatat |
399 |
Q |
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|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46545157 |
aaaaaaaaaaaacagcaacatagttttccttgaacattaatgtcccaaatgcgatgatatatatgatatgatattttcaactttagagcctatat |
46545063 |
T |
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