View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15261_high_1 (Length: 379)
Name: NF15261_high_1
Description: NF15261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15261_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 34718385 - 34718010
Alignment:
| Q |
1 |
tttcttaataatggagggaatgtccaggagggattcattattcactagtacatatgtgcaactagcaaataggttgatgttttattgacaaaagctagaa |
100 |
Q |
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| T |
34718385 |
tttcttaataatggagggaatgtccaggagggattcattattcactagtacatatgtgtaactagtaaataggttaatgttttattgacaaaagctagaa |
34718286 |
T |
|
| Q |
101 |
atgctaaataggataattgtaaccgttatgttaattaggattataaattgcagaattaataaatgacagttgatgatttatgggctcaacatcaacccta |
200 |
Q |
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| T |
34718285 |
atgctaaataggataattgtaaccgttatgttaattaggattataaattgcagaattaataaatgacagttgatgatttatgggctcaacatcaacccta |
34718186 |
T |
|
| Q |
201 |
gcttgtaattaagttgtatttatatgagaattc-ttttattttttgagtactttatatattaactctcatttatatgagaattctcctagaataaaaaac |
299 |
Q |
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| T |
34718185 |
gcttgtaattaagttgtatttatatgagaattctttttattttttgagtactttatatattaactctcatttatatgagaattctcctagaataaaaaac |
34718086 |
T |
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| Q |
300 |
acaatttctagcctaagcttctctgagttt--gactgacccaattatcattttaccactaaaaactcctcctcttc |
373 |
Q |
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| T |
34718085 |
acaatttctagcctaagcttctctgagttttatactgacacaattatcatcttaccactaaaaactcctcctcttc |
34718010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 18938589 - 18938657
Alignment:
| Q |
297 |
aacacaatttctagcctaagcttctctgagtttgactgacccaattatcattttaccactaaaaactcctcct |
369 |
Q |
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| T |
18938589 |
aacacactttctagcctaagcttctctgagtttgaca----caattatcatttttccacttaaaacccctcct |
18938657 |
T |
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