View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15261_high_6 (Length: 251)
Name: NF15261_high_6
Description: NF15261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15261_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 34718527 - 34718760
Alignment:
| Q |
1 |
taaaatatcaatagttttgaaataattataaaaaacttaacaaccatagttatggaatggggagtcattgcgtctatgtttgagaattaatgactcaatc |
100 |
Q |
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| T |
34718527 |
taaaatatcaatagttttgaaataattataaaaaacttaacaacgatagttatggaatggggagtcattgcgtctatgtttgagaattaatgtctcattc |
34718626 |
T |
|
| Q |
101 |
ctatttgggtttactttcggctttgagtttgggaagagggagttctaaattcctttgaggagcatagctctggggttacaggagagattctcttgtaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
34718627 |
ctatttgggtttactttcggctttgagtttgggaagagggagttctaaattcctttgaggagcatagctccggggttacaggagagattctcgtgtaata |
34718726 |
T |
|
| Q |
201 |
catttccttatctttcaatcaataatgtcgtaac |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34718727 |
catttccttatctttcaatcaataatgtcgtaac |
34718760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 6422627 - 6422705
Alignment:
| Q |
119 |
ggctttgagtttgggaagagggagttctaaattcctttgaggagcatagctctggggttacaggagagattctcttgta |
197 |
Q |
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| T |
6422627 |
ggctttgggcttgggcaaagggaattccgaattcctctgaggagcactgctctagggttacaggagagatcctcttgta |
6422705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 38379973 - 38379887
Alignment:
| Q |
115 |
tttcggctttgagtttgggaagagggagttctaaattcctttgaggagcatagctctggggttacaggagagattctcttgtaatac |
201 |
Q |
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| T |
38379973 |
tttcggctttgagcttgggcagagagtattacaaattcctctgaggagcattgctcttgggttacaggagtgttcctcttgcaatac |
38379887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 19942111 - 19942231
Alignment:
| Q |
104 |
tttgggtttactttcggctttgagtttgggaagagggagttctaaattcctttgaggagcatagctctggggttacaggagagattctcttgtaatacat |
203 |
Q |
| |
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||||||||||||| |||||||| ||||| ||||||| |||||||||||| |||||||||| ||| |||||| |||||||||| |||| ||||||||| |
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| T |
19942111 |
tttgggtttactta-ggctttgaacttgggcagagggaattctaaattcctctgaggagcattgctttggggtc-caggagagatcctctagtaatacat |
19942208 |
T |
|
| Q |
204 |
ttccttatctttcaatcaataat |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
19942209 |
ttccttatctttcaatcaataat |
19942231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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