View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15261_low_1 (Length: 550)
Name: NF15261_low_1
Description: NF15261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15261_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 23 - 477
Target Start/End: Complemental strand, 33479922 - 33479467
Alignment:
| Q |
23 |
tgattttgaattgaaggggtggtattagaaaagaagagagggagtagtttgcatgggaaatgaaagtacgtactatgcatgagaggagataatttgcgat |
122 |
Q |
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| T |
33479922 |
tgattttgaattggaggggtggtattagaaaagaagagagggcgtagtttgcatgggaaatgaaagtacgtactatgcatgagaggagataatttgcgat |
33479823 |
T |
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| Q |
123 |
tgagagagaaaggggtaaagctttggttgaaaaagtgagagaataagaagacatcctaataatagagtagattaattagaagatttggagctcatttaac |
222 |
Q |
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| T |
33479822 |
tgagagagaaaggggtaaagctttggttgaaaaagtgagagaataagaagacatcctaataatagagtagattaattagaagatttagagctcatttaac |
33479723 |
T |
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| Q |
223 |
gggtcaaagtaactaaataaaagttcccatacatttcctct-nnnnnnngttaccatacataatacattgcaaaaatataggggggttttcaaatctaga |
321 |
Q |
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| T |
33479722 |
gggtcaaagtaactaaataaaagttcccatacatttcctctaaaaaaaagttaccatacatgatacattgcaaaaatataggggggttttcaaatctaga |
33479623 |
T |
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| Q |
322 |
taaattcattttcatttaatattttgagttttgactctctacctatttatttattttggtagatgactctgcatttgtattacaattggatgtatgatag |
421 |
Q |
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| T |
33479622 |
taaattcattttcatttaatattttgagttttgactctctacctatttatttattttggtagatgactctgcatttgtattacaattggatgtatgatag |
33479523 |
T |
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| Q |
422 |
tataataatgatgaatatcaaaagaaaaccgtacaaattaatcacaaaactatata |
477 |
Q |
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| T |
33479522 |
tataataatgatgaatatcaaaagaaaaccgtacaaattaatcacaaaactatata |
33479467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 472 - 535
Target Start/End: Complemental strand, 33479177 - 33479114
Alignment:
| Q |
472 |
tatatatgtatatgatagaaatatgaaaaatatttcatttatcaatcactttgtaactaggtag |
535 |
Q |
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| T |
33479177 |
tatacatgtatgtgatagaaatatgaaaaatatttcatttatcaatcgctttgtaactaggtag |
33479114 |
T |
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