View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15262_low_3 (Length: 247)
Name: NF15262_low_3
Description: NF15262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15262_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 193
Target Start/End: Original strand, 4283357 - 4283489
Alignment:
| Q |
57 |
ctatgaaatcaaactaaaattatatatgagttaagtgaatgtagaataggcaataataagtaaaaaaacaacaaagattgatnnnnnnnnctagcaaagc |
156 |
Q |
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| T |
4283357 |
ctatgaaatcaaactaaaattatagatgagttaagtgaatgtagaataggcaataataa-taaaataacaacaaagattgat---aaaaactagcaaagt |
4283452 |
T |
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| Q |
157 |
tatataatttcaaaaacaagcattaaaaagtaaaatt |
193 |
Q |
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| T |
4283453 |
tatataattctaaaaacaaacattaaaaagtaaaatt |
4283489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 4240730 - 4240855
Alignment:
| Q |
54 |
tagctatgaaatcaaactaaaattatatatgagttaagtgaatgtagaataggcaataataagt--aaaaaaacaacaaagattgatnnnnnnnnctagc |
151 |
Q |
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| T |
4240730 |
tagctatgaaatgaaactaaaattatagatgagttaagtgaatgtagaataggcaataataagtaaaaaaaaaaaacaaagattgat---aaaaactagc |
4240826 |
T |
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| Q |
152 |
aaagctatataatttcaaaaacaagcatt |
180 |
Q |
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||| |||||||||| ||||||||| |||| |
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| T |
4240827 |
aaaactatataattccaaaaacaaacatt |
4240855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 4241971 - 4242010
Alignment:
| Q |
189 |
aaatttttaacatggtccgcactacttttcttgtgccttt |
228 |
Q |
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| T |
4241971 |
aaatttttaacatggtctgcactacttttcttgtgccttt |
4242010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 4285039 - 4285078
Alignment:
| Q |
189 |
aaatttttaacatggtccgcactacttttcttgtgccttt |
228 |
Q |
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| T |
4285039 |
aaatttttaacatggtctgcactacttttcttgtgccttt |
4285078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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