View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15263_high_6 (Length: 303)
Name: NF15263_high_6
Description: NF15263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15263_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 53076730 - 53076470
Alignment:
| Q |
13 |
gaacctgtgatgcttcttgctgcaagggcttccagggttgaaaaccaggacgcaatagatgccgccattgttggaacactagctgacccaaaagaggtaa |
112 |
Q |
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| T |
53076730 |
gaacatgtgatgcttcttgctgcaagggcttccagggttgaaaaccaggacgcaatagatgccgccattgttggaacactagctgacccaaaagaggtaa |
53076631 |
T |
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| Q |
113 |
cttctctataaattgcatgaattgctgtagtatggttagctgttagaaaaatgttgatatgactgattatcttgaacaaatattttctttgtgcaggcaa |
212 |
Q |
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| T |
53076630 |
attctctataaattgcatgaattgctgt---------------tagaaaaatgttgatatgactgattatcttgaacaaatattttctttgtgcaggcaa |
53076546 |
T |
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| Q |
213 |
gagctggggtaagagagattcatttcttaccattcaatcctgttgacaagagaactgccttgacttacattgatgg |
288 |
Q |
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| T |
53076545 |
gagctggggtaagagagattcatttcttaccattcaatcctgttgacaagagaactgccttgacttacattgatgg |
53076470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 28626250 - 28626368
Alignment:
| Q |
13 |
gaacctgtgatgcttcttgctgcaagggcttccagggttgaaaaccaggacgcaatagatgccgccattgttggaacactagctgacccaaaagaggtaa |
112 |
Q |
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| T |
28626250 |
gaacatgtaatgctttttgctgcaagggcttccggggttgaaaaccaggacgcaatagatgctgccattgttggaacactagttgacccaaaagaggtaa |
28626349 |
T |
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| Q |
113 |
cttctctataaattgcatg |
131 |
Q |
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| T |
28626350 |
cttctctataaattgcatg |
28626368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 1461083 - 1461153
Alignment:
| Q |
18 |
tgtgatgcttcttgctgcaagggcttccagggttgaaaaccaggacgcaatagatgccgccattgttggaa |
88 |
Q |
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| T |
1461083 |
tgtgatacttctggctgcaagagcttctagggttgaaaatcaggatgctatagatactgccattgttggaa |
1461153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 50275191 - 50275278
Alignment:
| Q |
206 |
caggcaagagctggggtaagagagattcatttcttaccattcaatcctgttgacaagagaactgccttgacttacattgatggtgatg |
293 |
Q |
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| T |
50275191 |
caggcacgagctggtgtcagggaggttcattttttcccattcaatcctgtagacaagagaactgctttaacttacattgatgctgatg |
50275278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 15867981 - 15868055
Alignment:
| Q |
205 |
gcaggcaagagctggggtaagagagattcatttcttaccattcaatcctgttgacaagagaactgccttgactta |
279 |
Q |
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| T |
15867981 |
gcaggcgagggccgggataagagaggtgcatttcttgccattcaatcctgttgataagagaactgctttgactta |
15868055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 15867799 - 15867897
Alignment:
| Q |
13 |
gaacctgtgatgcttcttgctgcaagggcttccagggttgaaaaccaggacgcaatagatgccgccattgttggaacactagctgacccaaaagaggta |
111 |
Q |
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| T |
15867799 |
gaacatgtgatgcttcttgctgctagggctgcaaggaccgaaaatcaggatgctattgatgctgctattgttggaatgcttgctgaccctaaagaggta |
15867897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 15162378 - 15162303
Alignment:
| Q |
200 |
tttgtgcaggcaagagctggggtaagagagattcatttcttaccattcaatcctgttgacaagagaactgccttga |
275 |
Q |
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| T |
15162378 |
tttgcgcaggcgagggccgggataagagaggtgcatttcttgccattcaatcctgttgataagagaactgctttga |
15162303 |
T |
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