View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15263_high_8 (Length: 280)

Name: NF15263_high_8
Description: NF15263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15263_high_8
NF15263_high_8
[»] chr4 (8 HSPs)
chr4 (1-257)||(52791820-52792079)
chr4 (153-260)||(11160780-11160887)
chr4 (31-70)||(55118764-55118803)
chr4 (31-88)||(6948197-6948254)
chr4 (31-88)||(11160649-11160706)
chr4 (35-76)||(11932019-11932060)
chr4 (5-77)||(11174644-11174716)
chr4 (5-77)||(11182106-11182178)
[»] chr8 (3 HSPs)
chr8 (16-84)||(24412640-24412708)
chr8 (16-82)||(24406502-24406568)
chr8 (36-89)||(24817213-24817266)
[»] chr5 (3 HSPs)
chr5 (26-76)||(35390550-35390600)
chr5 (5-76)||(8991416-8991487)
chr5 (26-78)||(36686932-36686984)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 52792079 - 52791820
Alignment:
Q  1 acaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttccacttccgaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52792079 acaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttccacttccgaaga 52791980  T
Q  101 tcacaaggtatgggacgctgatttcatcaaggaggttaatgtggttatgctattcgaactcatccgggccgcaaactatttaaacgtcaagagccttttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52791979 tcacaaggtatgggacgctgatttcatcaaggaggttaatgtggttatgctattcgaactcatccgggccgcaaactatttaaacgtcaagagccttttg 52791880  T
Q  201 ga---tcttacatgtcaagttgtagcaaacatcatcaagggtaagacgctggaggagatt 257  Q
    ||   ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  52791879 gatcttcttacatgtcaagttgtagcaaacatgatcaagggtaagacgccggaggagatt 52791820  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 11160780 - 11160887
Alignment:
Q  153 ttcgaactcatccgggccgcaaactatttaaacgtcaagagccttttggatcttacatgtcaagt-tgtagcaaacatcatcaagggtaagacgctggag 251  Q
    ||||| ||||||  ||| ||||||||| ||||| |||| || ||  ||||||||||||| ||||  ||||||| |||| |||||||||| ||||| ||||    
T  11160780 ttcgatctcatcttggctgcaaactatctaaacatcaaaagtctgctggatcttacatg-caagactgtagcagacatgatcaagggtaggacgccggag 11160878  T
Q  252 gagattcgt 260  Q
    |||||||||    
T  11160879 gagattcgt 11160887  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 55118764 - 55118803
Alignment:
Q  31 gcaagatcttgacgaaggttattgagtattgtaagaagca 70  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  55118764 gcaagatcttgacgaaggttattgaatactgtaagaagca 55118803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 6948254 - 6948197
Alignment:
Q  31 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc 88  Q
    ||||| ||||| | ||||||||||||||||| |||||||| ||||| ||| |||||||    
T  6948254 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttc 6948197  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 11160649 - 11160706
Alignment:
Q  31 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc 88  Q
    ||||||||||| | | |||||||||| |||| |||||||| ||||| |||||||||||    
T  11160649 gcaagatcttggctatggttattgagcattgcaagaagcatgttgacgctaccagttc 11160706  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 11932060 - 11932019
Alignment:
Q  35 gatcttgacgaaggttattgagtattgtaagaagcacgttga 76  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  11932060 gatcttggcgaaggttattgagtattgcaagaagcatgttga 11932019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 11174644 - 11174716
Alignment:
Q  5 tggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaa 77  Q
    |||||| ||| ||||||| | |||| ||||||||||| | |||||||| |||||||| ||||| || ||||||    
T  11174644 tggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaa 11174716  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 11182106 - 11182178
Alignment:
Q  5 tggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaa 77  Q
    |||||| ||| ||||||| | |||| ||||||||||| | |||||||| |||||||| ||||| || ||||||    
T  11182106 tggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaa 11182178  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 24412640 - 24412708
Alignment:
Q  16 ttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctacca 84  Q
    |||| |||| ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  24412640 ttccaaacgtaaccagcaagatcttgacaaaggttatcgagtattgtaagaagcatgttgaggctacca 24412708  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 24406568 - 24406502
Alignment:
Q  16 ttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctac 82  Q
    |||| |||| ||| |||||||||||| | |||||||| ||||||||||||||||| ||||| |||||    
T  24406568 ttccaaacgtaaccagcaagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggctac 24406502  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 24817213 - 24817266
Alignment:
Q  36 atcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttcc 89  Q
    |||||| |||| |||||||||||||| |||||||| ||||| ||||| ||||||    
T  24817213 atcttggcgaaagttattgagtattgcaagaagcatgttgaggctacaagttcc 24817266  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 35390600 - 35390550
Alignment:
Q  26 aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttga 76  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| |||||    
T  35390600 aactagcaacatcttggcgaaggttattgagtattgtaaaaagcatgttga 35390550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 8991416 - 8991487
Alignment:
Q  5 tggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttga 76  Q
    |||||| ||| |||| ||||  || |||||||||||| ||||||| ||||||||||| |||||||| |||||    
T  8991416 tggaatccctcttcccaacgttaccagcaagatcttggcgaaggtgattgagtattgcaagaagcatgttga 8991487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 36686984 - 36686932
Alignment:
Q  26 aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaag 78  Q
    ||||||||| |||||| | ||||||||||| |||||||| ||||| |||||||    
T  36686984 aactagcaacatcttggcaaaggttattgaatattgtaaaaagcatgttgaag 36686932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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