View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15263_low_1 (Length: 618)
Name: NF15263_low_1
Description: NF15263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15263_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Complemental strand, 12154716 - 12154119
Alignment:
| Q |
7 |
accataacacctctttcaaaactatcaagattgggttttaagttttccatctcgtctaaaatattttggagattattcaccaggttggaattagaaatgg |
106 |
Q |
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| T |
12154716 |
accataacacctctttcagaactatcaagattgggttttaagttttccatctcgtctaaaatattttggagattattcaccaggttggaattagaaatgg |
12154617 |
T |
|
| Q |
107 |
atgaggtaaagtcacaacctataatccctttgatcttgttcatgacttgagggacgttttgagaactaatagtagggagagaaataaaagatgtctcatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12154616 |
atgaggtaaagtcacaacctataatccctttgatcttgttcatgacttgagggatgttttgagaactaatagtagggagagaaataaaagatgtctcatg |
12154517 |
T |
|
| Q |
207 |
agaacgactcatatttaggatcagagacatagaatgaaaaaagaacaaagaagattgaggttatataggccttaattctagtttcaatactttcataaaa |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12154516 |
agaacgactcatatttaggatgagagacatagaatgaaaaaagaacaaagaagattgaggttatataggccttaattctagtttcaatactttcataaaa |
12154417 |
T |
|
| Q |
307 |
ccacctctaatgacacgttatagatggacccaccactttatgtgggacctgtttaaaattgttggaccaacacatattggtaatttttcatccacgcatg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12154416 |
ccacctctaatgacacgttatagatggacccaccactttatgtgggacctgtttaaaattgttggaccaacccatattggtaatttttcatccacgcatg |
12154317 |
T |
|
| Q |
407 |
cttctagtttcagcaactactctcataatctacgattttttccctcttctcatcatgctattggaccaacccatattggtaaaattgtttatacctttac |
506 |
Q |
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| T |
12154316 |
cttctagtttcagcaactactctcataatctacgattttttccctcttctcatcacgctattggaccaacccatattggtaaaattgtttatacctttac |
12154217 |
T |
|
| Q |
507 |
tcttttctattgaatcacgctacatctattcctttctgtaggttttgtccctgttttaattaataaagctacctttatgtgctttctctaattttattc |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12154216 |
tcttttctattgaatcacgctacatctattcctttctgtaggtttt-tccctgttttaattaataaagttacctttatgtgctttctctaattttattc |
12154119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 294 - 468
Target Start/End: Complemental strand, 12160724 - 12160550
Alignment:
| Q |
294 |
tactttcataaaaccacctctaatgacacgttatagatggacccaccactttatgtgggacctgtttaaaattgttggaccaacacatattggtaatttt |
393 |
Q |
| |
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|||||| |||||||||||| || ||||| ||||||||| |||||||| ||||||||||||||| ||||||| |||| ||||||| |||||| ||||||| |
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| T |
12160724 |
tacttttataaaaccacctatagtgacaggttatagatcgacccacccctttatgtgggacctatttaaaagtgtttgaccaacccatattagtaatttc |
12160625 |
T |
|
| Q |
394 |
tcatccacgcatgcttctagtttcagcaactactctcataatctacgattttttccctcttctcatcatgctatt |
468 |
Q |
| |
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| T |
12160624 |
tcatcaacacatgcttttagtttcagcagctactttcggaatctacgattgtttacctcttttcatcatggtatt |
12160550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 494 - 601
Target Start/End: Complemental strand, 12153616 - 12153514
Alignment:
| Q |
494 |
tttatacctttactcttttctattgaatcacgctacatctattcctttctgtaggttttgtccctgttttaattaataaagctacctttatgtgctttct |
593 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| | |||||||||||||||||||| |
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| T |
12153616 |
tttatacctttattcctttctattgaatcacgctacatctattcctttctgcaggtttt-tccctgtt----ctaatcacgctacctttatgtgctttct |
12153522 |
T |
|
| Q |
594 |
ctaatttt |
601 |
Q |
| |
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||||||| |
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|
| T |
12153521 |
ataatttt |
12153514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 552
Target Start/End: Complemental strand, 12159932 - 12159874
Alignment:
| Q |
494 |
tttatacctttactcttttctattgaatcacgctacatctattcctttctgtaggtttt |
552 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||||||||| || ||||||| |
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|
| T |
12159932 |
tttatacctttattcctttctatttaatcacgctacatctattcctttatgcaggtttt |
12159874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 605
Target Start/End: Complemental strand, 12153818 - 12153714
Alignment:
| Q |
494 |
tttatacctttactcttttctattgaatcacgctacatctattcctttctgtaggttttgtccctgttttaattaataaagctacctttatgtgctttct |
593 |
Q |
| |
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|||||||||||| || ||||||||||||||| |||||||| ||||||||| |||||| ||||| || |||| | ||||||||||||||||| | |
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| T |
12153818 |
tttatacctttattcctttctattgaatcacattacatctagtcctttctgcgggtttt-tccctattctaatca------ctacctttatgtgctttat |
12153726 |
T |
|
| Q |
594 |
ctaattttattc |
605 |
Q |
| |
|
|||||||||||| |
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|
| T |
12153725 |
ctaattttattc |
12153714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 494 - 605
Target Start/End: Complemental strand, 12160541 - 12160435
Alignment:
| Q |
494 |
tttatacctttactcttttctattgaatcacgctacatctattcctttctgtaggttttgtccctgttttaattaataaagctacctttatgtgctttct |
593 |
Q |
| |
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|||||||||||| || | |||||||||||||||||||| |||||||| ||||| |||| ||| |||| |||| | ||| |||||||||| ||||| |
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| T |
12160541 |
tttatacctttattcctatctattgaatcacgctacatatattccttgttgtagatttt-tccatgtt----ctaatcacgcttcctttatgtgttttct |
12160447 |
T |
|
| Q |
594 |
ctaattttattc |
605 |
Q |
| |
|
|||||||||||| |
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|
| T |
12160446 |
ctaattttattc |
12160435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 536
Target Start/End: Complemental strand, 12159529 - 12159487
Alignment:
| Q |
494 |
tttatacctttactcttttctattgaatcacgctacatctatt |
536 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||| |||| |
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| T |
12159529 |
tttatacctttattcgtttctattgaatcacgctacatatatt |
12159487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 494 - 540
Target Start/End: Complemental strand, 12159728 - 12159682
Alignment:
| Q |
494 |
tttatacctttactcttttctattgaatcacgctacatctattcctt |
540 |
Q |
| |
|
||||||||| || || |||||||||||| |||||||||||||||||| |
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|
| T |
12159728 |
tttatacctgtattcctttctattgaattacgctacatctattcctt |
12159682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 605
Target Start/End: Complemental strand, 12160276 - 12160238
Alignment:
| Q |
567 |
taataaagctacctttatgtgctttctctaattttattc |
605 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||| |
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| T |
12160276 |
taatcaagttacctttatgtgctttctctaattttattc |
12160238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 494 - 542
Target Start/End: Complemental strand, 12160337 - 12160289
Alignment:
| Q |
494 |
tttatacctttactcttttctattgaatcacgctacatctattcctttc |
542 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||| | |||||||||| |
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|
| T |
12160337 |
tttatacatttattcttttctattgaatcacactacgtatattcctttc |
12160289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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